Query= MSMg01no319_h14.b1 MSMg01no319_h14.b1 CHROMAT_FILE:
MSMg01no319_h14.b1 PHD_FILE: MSMg01no319_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:49 2005
(290 letters)
>mm_chr1_37557613_37558302
Length = 690
Score = 482 bits (249), Expect = e-140
Identities = 279/289 (96%)
Strand = Plus / Minus
Query: 2 ctcctgcttcggtcttctgagaagccaggacctcggctcccatgaccatgcccagatttt 61
|||||||| ||||||||||||||||||||| |||||||||||| ||| || |||||||
Sbjct: 490 ctcctgctccggtcttctgagaagccaggaactcggctcccatcaccctgtttagatttt 431
Query: 62 tctagttttgtgtttataaatggtgtcttggcgtttgttttcttaggagtttacacagag 121
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctcgttttgtgtttataaatggtgtcttggcgtttgttttcttaggagtttacacagag 371
Query: 122 aggtgcctacgcaagaaatgcagagtacggataaactgcgtcaccttcactcacgtcagt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aggtgcctacgcaagaaatgcagagtacggataaactgcgtcaccttcactcacgtcagt 311
Query: 182 aaacaggacacagtgtgaactttcttacaagactttcctggacacagtgctgtcttattt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaacaggacacagtgtgaactttcttacaagactttcctggacacagtgctgtcttattt 251
Query: 242 gtgtcctcctgcttcaggctcgagaaggggatacagcagctcatgtggc 290
|||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 250 gtgtcctcctgcatcaggctcgagaaggggatacagcagttcatgtggc 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no319_h14.g1 MSMg01no319_h14.g1 CHROMAT_FILE:
MSMg01no319_h14.g1 PHD_FILE: MSMg01no319_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:49 2005
(546 letters)
>mm_chr1_37399019_37399964
Length = 946
Score = 899 bits (465), Expect = 0.0
Identities = 522/548 (95%), Gaps = 12/548 (2%)
Strand = Plus / Plus
Query: 1 aaaactccaggatttatagcttaaaaggcaaatggttggaggctttcttatgacttacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaactccaggatttatagcttaaaaggcaaatggttggaggctttcttatgacttacta 260
Query: 61 attaatccctgccctgcccatgtagggtgcagaggctataaccccacagacttaatgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaatccctgccctgcccatgtagggtgcagaggctataaccccacagacttaatgtca 320
Query: 121 gaaactctttttttttttaaagttaataagccttattttaaagcagttttgggtcatacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaactctttttttttttaaagttaataagccttattttaaagcagttttgggtcatacg 380
Query: 181 agaattgattggagagtaaagctcccttgacccactccacgcatagctgtctgctcgtgc 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 agagttgattggagagtaaagctcccttgacccactccacgcatagctgtctggtcgtgc 440
Query: 241 tgcttgatgaggaggctgcggcgaagcagtgtgcttctccgatctgctgatggccttctg 300
|||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcgaggaggaggctgcggcggagcagtgtgcttctccgatctgctgatggccttctg 500
Query: 301 agttcagagggggcaggtgtcaggctttcttatgcttctgcacccccccccccagcctgg 360
||||||||||||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct: 501 tgttcagagggggcaggtgtcaggctttcttatgcttctgtagcctggcacccagcctgg 560
Query: 361 nagaactacgtggacctgtgggctcagtgcagtcacagatgatgcagccagaattttagg 420
||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 caga----------cctgtgggctcagtgcagtcacagatgatgcggccagaattttagg 610
Query: 421 gcaatactcctggtactcaggtatcccagtcaactagggtcagccacctgtcccagtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gcaatactcctggtactcaggtatcccagtcaactagggtcagccacctgtcccagtgtg 670
Query: 481 acaggtaagtagtggtaagggcagaaagtcagttcagggagaaacagag--gtttaatga 538
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 671 acaggtaagtagtggtaagggcagaaagtcagttcagggagaaacagagaggtttaatga 730
Query: 539 ctccaagt 546
||||||||
Sbjct: 731 ctccaagt 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
