Query= MSMg01no319_j22.b1 MSMg01no319_j22.b1 CHROMAT_FILE:
MSMg01no319_j22.b1 PHD_FILE: MSMg01no319_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:59 2005
(682 letters)
>mm_chr1_81321095_81322175
Length = 1081
Score = 1236 bits (639), Expect = 0.0
Identities = 669/679 (98%), Gaps = 1/679 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctggtcacctttcactttctcttccattcccttcttctctcttagatatgtaa 63
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctggtcacctttgactctctcttccattcccttcttctctcttagatatgtaa 263
Query: 64 tacctcagttaattattgcttttctgtgtgggctcaaaatttttcagttatacatcagaa 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacctcagttaattattgtttttctgtgtgggctcaaaatttttcagttatacatcagaa 323
Query: 124 tcctgatgcagtcttctattgcatagtttggctctatagttcttactccctgaggcccag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcctgatgcagtcttctattgcatagtttggctctatagttcttactccctgaggcccag 383
Query: 184 acccatgaaaagagtcaaatggaaccactccaatggccaatttggcttcagaggacatca 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acccatggaaagagtcaaatggaaccactccaatggccaatttggcttcagaggacatca 443
Query: 244 ctgtgattgctactgcttgcttctttttaaatagtctgttgtatatatacttgtgatggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtgattgctactgcttgcttctttttaaatagtctgttgtatatatacttgtgatggg 503
Query: 304 cagggcatttcactgaaggaaaacatattgaatctccccagctcaattccaagttgtaag 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 cagggcatttcactgaaggaaaacatattgaatctccc-agctcaattccaagttgtaag 562
Query: 364 aatgagcatgtctcacacaccccattggttatattcagttggctcctggaggattagaat 423
||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatgagcatgtcttacagagtccattggttatattcagttggctcctggaggattagaat 622
Query: 424 gcagcttgtctacgaaccacctctctctaaataaagaacttgtttaccaagggttcactc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcagcttgtctacgaaccacctctctctaaataaagaacttgtttaccaagggttcactc 682
Query: 484 tccctcatatgactggggtcatgggtacatccaatttatcaaaagccagcattttacaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tccctcatatgactggggtcatgggtacatccaatttatcaaaagccagcattttacaat 742
Query: 544 gaaattaaacttgcaattaaattaatgctaatgtaggtgattagcagaatatacttagtg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaaattaaacttgcaattaaattaatgctaatgtaggtgattagcagaatatacttagtg 802
Query: 604 aatacatcaatgcattccctgtaattgaattttatcttgtaacagtgtgctttccttcag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aatacatcaatgcattccctgtaattgaattttatcttgtaacagtgtgctttccttcag 862
Query: 664 gggatgccttttaaaagtt 682
|| ||||||||||||||||
Sbjct: 863 ggaatgccttttaaaagtt 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1081
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1071
Effective search space: 719712
Effective search space used: 719712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no319_j22.g1 MSMg01no319_j22.g1 CHROMAT_FILE:
MSMg01no319_j22.g1 PHD_FILE: MSMg01no319_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:59 2005
(646 letters)
>mm_chr1_81368970_81370015
Length = 1046
Score = 1112 bits (575), Expect = 0.0
Identities = 634/672 (94%), Gaps = 30/672 (4%)
Strand = Plus / Minus
Query: 1 cacatgccaattcctttatgtgtcatgcacagcagagatgtccacagaatgaagggggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cacatgccaattcctttatgtgtcatgcacagcagagatgtccacagaatgaagggggca 678
Query: 61 tgtttcttgtctgtgtggctatctagatacatatttcacaagccccagagttctatgcaa 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 677 tgtttcttgtctgtgtggctatctagatacatattacacaagccccagagttctgtgcaa 618
Query: 121 agtggcacctgggaataatgctaaggaggagaataacacaataagatgagaggttgtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agtggcacctgggaataatgctaaggaggagaataacacaataagatgagaggttgtgct 558
Query: 181 gagaggtgcacgtgtgaactggaaatccacctgaggcaatcagtataggcacagaatatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gagaggtgcacgtgtgaactggaaatccacctgaggcaatcagtataggcacagaatatg 498
Query: 241 aacaatagtgggctggagcagagacttaaactgcacacagtggtgatgaaagatgggctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aacaatagtgggctggagcagagacttaaactgcacacagtggtgatgaaagatgggctg 438
Query: 301 ccaggaggagatcaaggtctggacaacatcctaagtctttcagttttca----ccccaaa 356
||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 437 ccaggaggagatcaaggtctggacaacatcctaagtctttcagtttttatgtg----aaa 382
Query: 357 aatcaagggaagccttggatagttagcagagagtcacaattgacagctaatcagaaaatg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcaagggaagccttggatagttagcagagagtcacaattgacagctaatcagaaaatg 322
Query: 417 tctgtagaggagagaaaaagttacagagtaaaaacaggaaaattctcctttatcttttcc 476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtagaggagagaaaaaattacagagtaaaaacaggaaaattctcctttatcttttcc 262
Query: 477 tcataggcattcacccaaccctggattctaagtgtagtggacattatcaagatcaactat 536
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcataggcaatcacccaaccctggattctaagtgtagtggacattatcaagatcaactat 202
Query: 537 g----------------------anacacacacacacacacacacacacacacacacgga 574
| | |||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaacacacacacacacacacacacacacacacacacacacacacacacacacacacgga 142
Query: 575 ggcaggtatgcacccatgctcctacatattatcatatgcacataccattttaagcctttt 634
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 141 ggcaggtatgcacccatgctcctacatattatcatatgcgcataccattttaagcctttt 82
Query: 635 cacctaaagatg 646
|| |||||||||
Sbjct: 81 catctaaagatg 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
