BAC Information

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BAC

Clone NameMSMg01-319L12
Chromosome1 (Build37)
Map Location 25,772,459 - 25,772,803
singlet/doubletsinglet
Overlap geneBai3
Upstream geneLmbrd1, 4930472D16Rik, LOC669171, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319L12.T7 (MSMg01no319_l12.b1)MSMg01-319L12.TJ (MSMg01no319_l12.g1)
ACCAG439157AG439158
length718721
length of high quality
(start - end)		373 (43 - 415)348 (73 - 420)
definitionCHROMAT_FILE: MSMg01no319_l12.b1 PHD_FILE: MSMg01no319_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:06 2005CHROMAT_FILE: MSMg01no319_l12.g1 PHD_FILE: MSMg01no319_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACGAGAATCTACCCACTCTGTACAAGTCTGTTACAGCCCCTTGAATT
GACTCAAACAAATGTTTATAATTCTCTTGGTTCCATGCTGTTCCGGCTCA
AATGAAGATGTTGAGGACGAGGAGGAGCTCTTTTTACTAAGGATTCACAG
TGCCAGAGACAGGATGTGATACCAGGGTATCTGTCTACAGAATGTGTCCC
TTTCTCTGTTGTGTCATATTTCTTTGAAATACTTGTCTAAAAACGACACA
AACCTCAAAGGCAACATTTTGTGCGATGGTGTGATGAGCATGTCCTTGCA
GGTGAATTAGCTGGGGCAACTTCTATCAGAGGTCATGTGGTTGTACCCAC
TCATAATTTTTCACCCCCCCCCCCGACTGGAATGTACCCCTCAATATTTG
GTGTTCATGTGAGTAGTGGGTAAGAGAAGTTAGAGGTTTAAATTCTCAGT
GTTTCTCCATTTCCATCCTAACCTGAGCTAACCACTGCCCTCTTTTATGG
CCTAGGCCTCTAGTGTACTTGACCTTGTCTATTTGCAAGGAGAGAAGCCT
GCTCAGCATCATTCAACATGCAAGTGTTTGTAGAGTCTCTGGACTGTGCC
TATGTGGCAGACTCTGCTGCTCTTCCTATGCTGTAATGGAAAACTGTCCT
TTGCTTTGCTTGGCTTTG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCCAGGACAGCCAGGGCTACACAGAGACAC
CCTGTCTCAAACAAACAAACAAAAAACAAAAACAAAACAAACAAACAAAC
AAAACACCATGCTCAGAACACACTCAAGCACTTCCATAAGACAAAAGAAT
AAGAGAGAAAAATAACGGACATATAAGTCATTGGCCACAAATAGTCTCTT
AACTTCTCAGAGCAGTGGGATTGAGGACTGTAGGAGAGTGTGAAAGTGTG
TGAGGAATTGGAAACGGTGGAAGCTGCATTTTGGAGACATGAGTGTACCA
TCCACATGATAGGTTGAGCTGGGCAACAACACTGCAGTATTTGGCTGAAT
GTTATACAGCACTTCACCCCCCCACCGCGCATGCTATGTGATCAAACATC
TGTTATCACACTGGGAGGAATCCTGGATCAGAACCCTTTTAATCATACCA
CGAATATAAAGATAGGCTCCACGCAGAAACCGCCTACCTGCACCTATTGG
ATTATCAATGGTTAGGGAATTAAACTGTTTCTGTTCCCTTCAGCTACTTC
TTGCTTGAAACATTAGAGGCCACGGGCTAAACAAAATAGCCCTGGGTTCC
CATCTGGTCTCTGTGTAGCATGTGNAGCCCTTCTAGCTTTTGAGGGATTT
TAGGGTTTTGGTACTGAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_l12.g1 MSMg01no319_l12.g1 CHROMAT_FILE:
MSMg01no319_l12.g1 PHD_FILE: MSMg01no319_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:06 2005
         (348 letters)



>mm_chr1_25772259_25773006
          Length = 748

 Score =  621 bits (321), Expect = 0.0
 Identities = 339/345 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacacagagacaccctgtctcaaacaaacaaacaaaaaacaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccagggctacacagagacaccctgtctcaaacaaacaaacaaaaaacaaaaa 260

                                                                       
Query: 61  caaaacaaacaaacaaacaaaacaccatgctcagaacacactcaagcacttccataagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaacaaacaaacaaacaaaacaccatgctcagaacacactcaagcacttccataagac 320

                                                                       
Query: 121 aaaagaataagagagaaaaataacggacatataagtcattggccacaaatagtctcttaa 180
           ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 321 aaaagaacaagagagaaaaataacggacatataggtcattcgccacaaatagtctcttaa 380

                                                                       
Query: 181 cttctcagagcagtgggattgaggactgtaggagagtgtgaaagtgtgtgaggaattgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctcagagcagtgggattgaggactgtaggagagtgtgaaagtgtgtgaggaattgga 440

                                                                       
Query: 241 aacggtggaagctgcattttggagacatgagtgtaccatccacatgataggttgagctgg 300
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccgtggaagcagcattttggagacatgagtgtaccatccacatgataggttgagctgg 500

                                                        
Query: 301 gcaacaacactgcagtatttggctgaatgttatacagcacttcac 345
           ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 gcaacaacactgcagtatttggctgaatgttatacagcatttcac 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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