Query= MSMg01no319_p14.b1 MSMg01no319_p14.b1 CHROMAT_FILE:
MSMg01no319_p14.b1 PHD_FILE: MSMg01no319_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:23 2005
(293 letters)
>mm_chr1_77224348_77225040
Length = 693
Score = 551 bits (285), Expect = e-161
Identities = 291/293 (99%)
Strand = Plus / Minus
Query: 1 cccaaaggagggcttcatttacgcggctgctccatccctggcttacatcctttccacaaa 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 493 cccaaaggagggcttcatttacgtggctgctccatccctggcttacatcctttccacaaa 434
Query: 61 acactcaaaagagacactggctacagtcactcagacatttgacacctgtctaggccaaag 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 433 acactcaaaagagacactggctacagtcactcggacatttgacacctgtctaggccaaag 374
Query: 121 ggatccaatgtacactaattagaggaaaacaacttcctacagggttctggtacccacagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggatccaatgtacactaattagaggaaaacaacttcctacagggttctggtacccacagc 314
Query: 181 atctctttaaccctttctctcagcacagaaggggtatataacaatctcataatcgcttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atctctttaaccctttctctcagcacagaaggggtatataacaatctcataatcgcttca 254
Query: 241 cttcctctttcagccgactgtttttgttcaaagctgttttcactttctgccta 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cttcctctttcagccgactgtttttgttcaaagctgttttcactttctgccta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no319_p14.g1 MSMg01no319_p14.g1 CHROMAT_FILE:
MSMg01no319_p14.g1 PHD_FILE: MSMg01no319_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:23 2005
(640 letters)
>mm_chr1_77057636_77058676
Length = 1041
Score = 1160 bits (600), Expect = 0.0
Identities = 630/648 (97%), Gaps = 15/648 (2%)
Strand = Plus / Plus
Query: 1 agggaagagataggaagggacagcactggaagagaagctgaagccagaaacaagttgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggaagagataggaagggacagcactggaagagaagctgaagccagaaacaagttgcaa 260
Query: 61 agcttgattcttttacagccatggagaggcgctgaactatttagagaagatgcgctacac 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 agcttgattcttttacagccatggagaggtgctgaactatttagagaagatgcgctacac 320
Query: 121 gtcagaattgctctttgggtacacgactgaagatctggatatggatcaggaaatgtttac 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gtcagaattgctctttgggtacacgactgaagatctggatgtggatcaggaaatgtttac 380
Query: 181 agcaggattcgtatgacgagaacatgtccaaagcaaaggaacacacacacatgcacacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 agcaggattcgtatgacgagaacatgtccaaagcaaaggaacacacacacacgcacacaa 440
Query: 241 acaaaaagctgagttccaccatgtaaaatatgacctcattaacataccccttgctatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaaaagctgagttccaccatgtaaaatatgacctcattaacataccccttgctatgaa 500
Query: 301 gaaaattggtgtttcaacccaggttgaactaaagtttacctttgccccccc-------gc 353
|||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 gaaaattggtgtttcaacccaggttgaactaaagtttacctttg-------aattgttgc 553
Query: 354 aaaattgtttaagggaagtgtcgaatggagagactcttttatagacaagattgctatgct 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaaattgtttaagggaagtgtcgaatggagagactcttttatagacaagattgctatgct 613
Query: 414 tctgctttttaaagagaagctgctttttttctttctttctgacttcagtgcagtcctggg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tctgctttttaaagagaagctgctttttttctttctttctgacttcagtgcagtcctggg 673
Query: 474 gtaaccatttaaacatcaaaaatgtacttggataattacaaatattgaatgttagttatt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtaaccatttaaacatcaaaaatgtacttggataattacaaatattgaatgttagttatt 733
Query: 534 cattaaggcagacctggcatttcactgatcttaaaattataaacctgcaatgaaaaaaaa 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cattaaggcagacctggcatttcactgatcttaaaattataaacctgcaatgaaaaaaaa 793
Query: 594 aaa-gcctaacacatcagtaatttagacctggcttctctccaaaggta 640
||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aaaagcctaacacatcagtaatttagacctggcttctctccaaaggta 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space: 649530
Effective search space used: 649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
