BAC Information

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BAC

Clone NameMSMg01-320A16
Chromosome1 (Build37)
Map Location 15,473,800 - 15,473,961
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320A16.T7 (MSMg01no320_a16.b1)MSMg01-320A16.TJ (MSMg01no320_a16.g1)
ACCAG439389AG439390
length780789
length of high quality
(start - end)
58 (230 - 287)163 (188 - 350)
definitionCHROMAT_FILE: MSMg01no320_a16.b1 PHD_FILE: MSMg01no320_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:28 2005CHROMAT_FILE: MSMg01no320_a16.g1 PHD_FILE: MSMg01no320_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTTTTNNTTTTTCNNTTTTCCTGTCGGGAGCTGCCGCGCCCGACGTAT
TAATTTCTCACATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAG
AGGATCCGCGGAATTCTTGGTTTCAAAAAAAGGGCTTGGNGATACTAAAT
TTCATATAAATTGATCAAGTGATTTTTTCTCACAAAGGAGGCGAGAGAAG
AATTGTTGCCAGGCTACAATATACAGGCATCTGCTTTTCTCCTGAAATAT
AAATGCTAGTTCTAAACAATTAAAAATTTATTTTACGGGACGGGTACAGT
GGAGCACACCTTTAATCCAAGCACTTGGGAGGCAGAGGTATGCGGACTTC
TGAGTTCGAGGATAGCCTGGTCTATAGATTGAGTTCCAGGATAGTTAGGA
CTACACAGAGAAATTCTGTTTCTTAATAAAAACATACAAAAGATAATAAT
ATTTTACAGTGTTGCTCAACTCATCTGACTAGAACACATATGTCTCAATT
TAGAATTAACAAAATGTGAACTAATAAGAATAGAATACATGTTTGCTGGA
TTTTTAAAATGATGTAATAATTTCAATATTGTTTGCTAATACGTGAAAAA
AGGTAAAGACATTTTAATCCATCATAAGCTTACGGAGATTTTGTAAAGTT
TTTATCTGCAGATTATTGATCTTCTCCCGCGAGAACAAAGGTTGATCTAT
ACACACTTTTGACATCTTGTATAATTGGTGAATGCCCATCTTTTTCCGTT
TGATATTTGTGCACATCCTAATTTGTTGGT
TCGCCCCCCCCCGCCCCTTCCCCATTCCTGTTGTTTTTTCGTTGTAAAAT
ATCNAATCTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCATGGAGATTGG
TTAAGGAGATGGAGGTGGGGGAGGGATTTATCCCCGGTTGAAGGGAAAGC
CTGATATTGAAATGAACTAAATCTGTGCGAGTGGCTATTTTTGTCAGCCC
AACCACCTTGGGTGTGTGATCAGGTGTTTACTTTTGATCCAGCTCTTTTT
ATAGATGCTGGGTTTTCTTAAAGGCAGCTAGCTCTGTTTTATTCTTTCCA
AAGCTGTTGTAATGACTTGGAGGCAGGCTTATTTTTTATTTGCCATCTGT
AATCCCAAAAGGACAAAATTGAAATGAGTTCCCCAAGACGGTACCTTAAG
ATGTATAAATAGTTTAGTCAGCTCCGGTTTGTATAAATCCCATGAATTAT
CCGTGGGGGGGGGGGGATGTATTACCATTTCAAAAGTGTTTTTGGAGTGT
CAGACCTGGTTCAACTTGTAAAGGTAGTTTTGGTGATTATTAAAGTCAAT
CTTCTTTCCATCCCATATGTTCACTCCCTCTTAGCAAACTTTATATGCTT
CAGTATAGGGGATATTTTAGGGTCTCTTACCTTATATCGAGTGCTTATTG
TGATTTTTTCCAGCGTAAAGGGTTTTTGGGGAATTTTTTCTGTGTTTTAA
CCCTGGATTTTTTTTTTTTGCTAGTGGATACAGTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_a16.g1 MSMg01no320_a16.g1 CHROMAT_FILE:
MSMg01no320_a16.g1 PHD_FILE: MSMg01no320_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:28 2005
         (163 letters)



>mm_chr1_15473600_15474162
          Length = 563

 Score =  282 bits (146), Expect = 6e-81
 Identities = 158/162 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaagggaaagcctgatattgaaatgaactaaatctgtgcgagtggctatttttgtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaagggaaagcctgatattgaaatgaactaaatctgtgcgagtggctatttttgtcag 260

                                                                       
Query: 61  cccaaccaccttgggtgtgtgatcaggtgtttacttttgatccagctctttttatagatg 120
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 261 cccaaccaccttgggtgtgtgatcaggcgtctacttttgatccagctctttttatagatg 320

                                                     
Query: 121 ctgggttttcttaaaggcagctagctctgttttattctttcc 162
           |||||||||||||||||||||||||||||||  |||||||||
Sbjct: 321 ctgggttttcttaaaggcagctagctctgttccattctttcc 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)