BAC Information

Click to search

BAC

Clone NameMSMg01-320D05
Chromosome1 (Build37)
Map Location 105,289,717 - 105,289,942
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320D05.T7 (MSMg01no320_d05.b1)MSMg01-320D05.TJ (MSMg01no320_d05.g1)
ACCAG439500AG439501
length715712
length of high quality
(start - end)
226 (122 - 347)235 (109 - 343)
definitionCHROMAT_FILE: MSMg01no320_d05.b1 PHD_FILE: MSMg01no320_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:40 2005CHROMAT_FILE: MSMg01no320_d05.g1 PHD_FILE: MSMg01no320_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTGT
CTCTTCCACTTGAGAGTTGATTTCAGAACTGAGCAGCACCATGCTCACCT
CAATTTTTTACCCACACAAAATATCAAACTCATGTGCTCATGCTTGCATG
GAAGCATTTTGCCAATTGAGTCATATATCCCTAGCTCTACTCCTGTTGTC
TTTAGTCAGCTATATATAAGGAATATCTTTTGTCTTTAGTTTATAGCGTT
AAGAGGAGACCAGAAAATAATTTCTAAGAAGTCCAAGGAAACAATGTTAG
TAAGCAGGAATTTTGCCTGTTGAACGCAGGGACTCTGATTTAACAATGAN
AATACCTCCCGTTGCAGGCCCCGTTATATAAATGTTTAACTGAGAGAAAA
AATTAGTAAGATAAAAAAAGAAAGAATTCATTAAACTCACAAGTATTAAT
TTTCCTTCCTTAATAGAGCATTTTGACATTTCTAAGGTTGAAGTTTTCAT
ATTATTTTTAAGGACCAGTGTTCCTAGATTTTAAAATCTAGCTTACACTC
AATTAAGAATACCCATGTGCCCTTGTTCTGAAATGCAGGCTGATTATAAG
CAGAGTACTAGAATTTTTCAGAAGGACTGATTTATCAAGTATGTACATTC
TTTTATCTTGAATGCCTAGAATAGAGGGAATGGCTGGAGCATCTTACCTC
ATTTCTTATGAAGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACTAATGTGTTGGTTAGAATAAGAATAGTGCCCATGGGCTC
TTAGCCTCTATTGCTTGGGAAGTAGCACATTTTTTTTTGGAGTAGGTGTG
GTTTTTTTTTTTGGATGAAATGTGTTTCTTGGGTTGGACTTTGGGTGCCA
ATCTCTTTCCCTGTCTTCTGCCTGTGGATCAGGATGTAGAACTCTTAAAC
TAATCCTCCAGCGTCATATCTACTTTCATTGCACCATGCTTCTTGCTAAG
ATGGTGATGACTAATTATCTGAAACTATAAGCAAGCCCCAATTAAGTGNC
TCCGCGGCATGCCCGCTCTTCACAGAAATAGAACACTGACTAAGACATTA
AGTGAATAAAAAAGATCATGCATCACTTCGCAATTGTGTTGTAATTGTCT
TTTGTGATACTTAGTCATCACTGCTTTACCTCTGATCAGTTCCGTAAGAT
TTTGTGTGGCAATGGGAAAAACTGCACCTAGAATTTGCTGTTTGGTATAG
ATGCACTTCTTTATAAGCCAATTGTGCATACATGAAAAGTTATTAAGCTG
AAATTCATAGGACAAATCTCCAGTTTACAATAAAATTTGAAAACCTTATG
TTTGTTTATGTCATACTATGAATGGTTATAGGCTATATTTACGTAGGAAA
AACAGACACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_d05.b1 MSMg01no320_d05.b1 CHROMAT_FILE:
MSMg01no320_d05.b1 PHD_FILE: MSMg01no320_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:40 2005
         (226 letters)



>mm_chr1_105289517_105290142
          Length = 626

 Score =  414 bits (214), Expect = e-120
 Identities = 223/226 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcaaactcatgtgctcatgcttgcatggaagcattttgccaattgagtcatatatccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcaaactcatgtgctcatgcttgcatggaagcattttgccaattgagtcatatatccc 260

                                                                       
Query: 61  tagctctactcctgttgtctttagtcagctatatataaggaatatcttttgtctttagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagctctactcctgttgtctttagtcagctatatataaggaatatcttttgtctttagtt 320

                                                                       
Query: 121 tatagcgttaagaggagaccagaaaataatttctaagaagtccaaggaaacaatgttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatagcgttaagaggagaccagaaaataatttctaagaagtccaaggaaacaatgttagt 380

                                                         
Query: 181 aagcaggaattttgcctgttgaacgcagggactctgatttaacaat 226
           |||||||||  ||||||||||||| |||||||||||||||||||||
Sbjct: 381 aagcaggaaaattgcctgttgaacacagggactctgatttaacaat 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)