Query= MSMg01no320_e21.b1 MSMg01no320_e21.b1 CHROMAT_FILE:
MSMg01no320_e21.b1 PHD_FILE: MSMg01no320_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:47 2005
(268 letters)
>mm_chr1_59125962_59126629
Length = 668
Score = 487 bits (252), Expect = e-142
Identities = 264/268 (98%)
Strand = Plus / Plus
Query: 1 cccaacacaccaaccttgttcagaaagcaatacggattcagccacattacccttgattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaacacaccaaccttgttcagaaagcaatacggattcagccacattacccttgattgt 260
Query: 61 tccaaattacttggtcttgactggagattcaaaattctctttttgaagcctcatgccatc 120
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 261 tccaaattacatggtcttgactggagattcagaattctctttttgaagcctcatgccgtc 320
Query: 121 tgacaattctaatatttttaaataagtttaggatgaactttgtttcttatgcatgtgata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacaattctaatatttttaaataagtttaggatgaactttgtttcttatgcatgtgata 380
Query: 181 aacccaacccatcagatatcaggagtcatgatgacaaataccgacaaagtgagactaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aacccaacccatcagatatcaggagtcatgatgacaaataccgacaaagtgggactaaga 440
Query: 241 aaaatggtttctgttttactttttgtct 268
||||||||||||||||||||||||||||
Sbjct: 441 aaaatggtttctgttttactttttgtct 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no320_e21.g1 MSMg01no320_e21.g1 CHROMAT_FILE:
MSMg01no320_e21.g1 PHD_FILE: MSMg01no320_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:47 2005
(648 letters)
>mm_chr1_59278535_59279582
Length = 1048
Score = 1185 bits (613), Expect = 0.0
Identities = 641/651 (98%), Gaps = 3/651 (0%)
Strand = Plus / Minus
Query: 1 tctgtgtacgcagggcagtggtggcgcacgcctttagtcccagcatttggcaggcagagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 968 tctgtgtacgcagggcagtggtggcgcacgcctttagtcccagcatttgggaggcagagg 909
Query: 61 caggtggatttctgagtttggggccagcctggtctacagagtgagttccaggacagccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 caggtggatttctgagtttggggccagcctggtctacagagtgagttccaggacagccag 849
Query: 121 ggctatacagagtaaccctgcctcagaaaacc-aaaaaaaaaaaaaaaaaaagaaaagaa 179
||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| ||
Sbjct: 848 ggctatacagagtaaccctgcctcaaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaa 789
Query: 180 aagaaaagaaaagaaaagaattctgtgtactaatagcattaagtttattcaaatttacca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aagaaaagaaaagaaaagaattctgtgtactaatagcattaagtttattcaaatttacca 729
Query: 240 tctgtttatagtacctttcatccgaatttgatcccaaactgttctaaattaaacacttac 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 728 tctgtttatagtacctttcatccaaatttgatcccaaactgttctaaattaaacacttac 669
Query: 300 aaggtagaaagtaatttcctccggatacacagatgggaaacagtgagaattccaggcagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaggtagaaagtaatttcctccggatacacagatgggaaacagtgagaattccaggcagt 609
Query: 360 ctggaataaacagatggacctagatctccctgccagtgtgggttgtttgcagagcagtga 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 608 ctggaataaacagatggacctagatctccctgccagtgtgagttgtttgcagagcagtga 549
Query: 420 ccatgccataccaaattataaatttggtcccagtattataaagtctacagaaatagggct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ccatgccataccaaattataaatttggtcccagtattataaagtctacagaaatagggct 489
Query: 480 ttgttcttgtactttttttaaaaaatgaattttggtgccattaaaacttggaattgttaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttgttcttgtactttttttaaaaaatgaattttggtgccattaaaacttggaattgttaa 429
Query: 540 attgaaatgcgtctggtatttcctttgtgagtttgttttactttctttttttc--ttttt 597
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 428 attgaaatgcgtctggtatttcctttgtgtgtttgttttactttctttttttcttttttt 369
Query: 598 tttttttaacattgcgttttaaactcatgggttattattttcaaacaataa 648
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tttttttaacattgcgttttaaactcatgggttattattttcaaacaataa 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
