BAC Information

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BAC

Clone NameMSMg01-320G23
Chromosome1 (Build37)
Map Location 107,744,665 - 107,744,929
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
Downstream geneEG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320G23.T7 (MSMg01no320_g23.b1)MSMg01-320G23.TJ (MSMg01no320_g23.g1)
ACCAG439668AG439669
length729732
length of high quality
(start - end)
287 (387 - 673)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no320_g23.b1 PHD_FILE: MSMg01no320_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:56 2005CHROMAT_FILE: MSMg01no320_g23.g1 PHD_FILE: MSMg01no320_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTTCCCTGACACCTGAAGGTTCCACATGTCACATTCAAACTAGTCT
ACACTCATAGGTCAAAAGTATTCCTCTATTTTACTAGCTGGGTCACATGC
GGGCAGAAAACATCACATGTCACTTCTGTTTCAACTTTGCTGCTTAATGA
CCAGACTTTAAATTTTTGTCCTTTTAAAAGCTTACTACTTTATTTTCCAT
TGTATACACACCTGTCTGTGTGTATATGAGTGCAGGTGCCTTCAGAAGCA
AAAGGCATTGGCTCTCTGAGGGGCTGGAGTTACAGGTGGCTGTAAACTAA
TGGAGGTGCTAGGAATTGATCTCTGCCCCTCCGCGATCAGTGTGTGTTCT
AAACTGCTGAGCCATCATGCCAGCCCTTGTCAAATAATATTTTAAATAAT
TGCCTTACCTTATGATAGCAATAGAAGATACATTGTCAATAAGATATAAT
AAAACTAATATTCAACATCATAGCACACTATAAGGATCAGAGATAATTTG
GGTCATAATTTTGTTTTGTTTTAAGATAGGATCTCTCTATTATAGCCCTG
GCTGTCCTGTAATTTGAGATGTAAACCAGATTGGCCTTGAATTAATAGAG
ATTTGCCCGATTTTGCCTCCCTAGTGTTGGGATTAAAGGATTGTGCCATC
ATGCCTGGNTGGATTACAATTTTTGTATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTCCAAGAAAAACATACTGGTGA
ACAATTTCTCCGGGCAAAATGAGAACACAAAGGAAAGATATCCTCAGCCA
ATGGTTTGGACAAGAGACTGGGTCATTTCACTAAAAGACACATCACCACA
ACTTTCCCTCATCCTTTCTGTTTATGTGCCAACATTTCTTTTATTCAGCT
TATAAGACAATACTGACATTCTATGTATACAAAAGTCACTAAAAAGAAGC
AGATGATATGGATGTAAAATATTTATTGGATTTAATAACTAAAAAATAAA
AGCATCTATTGCATTCATATTTTAGTGACCCTCCGCCCCAGGGGAGTGCG
GGGGCAGGAGATATACTGAACACTAAATGCCAGACTAATACATATAGTCA
CTGCTCTCAAATACCTTCTTCAAAATACCTCAAGGCAAGAAAAAAGTTTT
AAGGCATAAGAAATAAAGATTATTTTAAATTGTAATTTATTTTATGTCAC
ACATAACTTCTCAAATAACAGAGAAATAATTTTCAATTTAATATTATTCC
TGATTCCTGTATCTTCTAATTTCATATAATTAAATACTAAGCCAATAAAT
TTTTACTACAGTGCTAGCTAATATCCTCATGACACTATTAACTAATAAGC
ATGCATATTTCTTGCTCTTTGTCTGCAGTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_g23.b1 MSMg01no320_g23.b1 CHROMAT_FILE:
MSMg01no320_g23.b1 PHD_FILE: MSMg01no320_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:56 2005
         (287 letters)



>mm_chr1_107744559_107745244
          Length = 686

 Score =  468 bits (242), Expect = e-136
 Identities = 260/266 (97%), Gaps = 1/266 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   cagtgtgtgttctaaactgctgagccatcatgccagcccttgtcaaataatattttaaat 61
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 371 cagtgtgtgttctaaactgctgagccatcacgccagcccttgtcaaataatattttaaat 312

                                                                       
Query: 62  aattgccttaccttatgatagcaatagaagatacattgtcaataagatataataaaacta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 311 aattgccttaccttatgatagcaatagaagatacattgtcaataagatacaat-aaacta 253

                                                                       
Query: 122 atattcaacatcatagcacactataaggatcagagataatttgggtcataattttgtttt 181
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 252 atattcaacatcatagcacactataaggatcagcgataatttgggtcataattttgtttt 193

                                                                       
Query: 182 gttttaagataggatctctctattatagccctggctgtcctgtaatttgagatgtaaacc 241
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 192 gttttaaaataggatctctctattatagccctggctgtcctgtaatttgagatgtagacc 133

                                     
Query: 242 agattggccttgaattaatagagatt 267
           ||||||||||||||||||||||||||
Sbjct: 132 agattggccttgaattaatagagatt 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)