BAC Information

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BAC

Clone NameMSMg01-320J14
Chromosome1 (Build37)
Map Location 82,433,508 - 82,433,738
singlet/doubletsinglet
Overlap geneRhbdd1
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneCol4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320J14.T7 (MSMg01no320_j14.b1)MSMg01-320J14.TJ (MSMg01no320_j14.g1)
ACCAG439790AG439791
length736717
length of high quality
(start - end)
234 (128 - 361)231 (108 - 338)
definitionCHROMAT_FILE: MSMg01no320_j14.b1 PHD_FILE: MSMg01no320_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:08 2005CHROMAT_FILE: MSMg01no320_j14.g1 PHD_FILE: MSMg01no320_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTGTGCCTGCCGTGGGTGAAAATGAACCCGTGTGTTTGAAATT
GGCACAGAAATACTTTACCGCACGAAGGGAAGAGAAGCTAGAGACGAGGT
AGGGAGGCGAAGACTCCTAGGCAACCCAGAGGCTTTAAAGGAAAGAACAT
GGCTGTGAGGACCCGAGGATGAAGAGATCAGAGTATTTTAAACTTGATAA
AACAAGAGAGGAAGCCACGTGCCCTTCTAGGAGGAAGGGATGGGAGCTTC
TGAGCTCTGGACATTTGTGTTTCTTCCTATGTATTTAGTTTCACATACTC
AGTTCATATTTTTTGATCAAGTCGTATACTCCCAAAAGAACGATGTTAAT
GCTTAGGTGGGCATGTAGCTGAGTTAAACTATATGCTGAATCTTTAGTTA
AAAAAAAAACAATAACCGTCATACACCTGACAGTTTACTCAGTAGCTTTC
TTGCCTGTTGTTCCCAAGTCAAGTCACTTGTGTCAAATGGCCACCACATC
AACCATCTGATGGGAAGAGAACTATATAATAGCAGAGTCATGCTGCCCCA
TCTCAGAGCTGTTAACTCTGAGATCCCAAGTGCCGAATGAGGTTTACAGC
TGGCTGCCTTGATTGGCTGGTTGGCAAGATGGAAATCTCAGTGTTGAAGT
TGTGACCTTCTGTTACCCTTCTTTCAAGCCATCCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCAAAA
AAATTCCAAACCACTTGTATCAGACATCTAGAGGACAAACTTAATGTTTC
TCGAAAAACCTTTTGCAAGTTCTTTGTGAAAACGTGCTTTGTGGTCACTA
CTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTCTTCTCATACAT
TACACTCCCACCACAGTCATTTTGGTTAGCTGTACTGAGTTAGGGTCTCT
TTAGTAAAATAACAAGAGGACATTAATTAAAATCTTTATTAAGATTTATT
TTTTTTGTAGAGTTTGTGCCCAGATCATAAATGTAATCTTTTTTTTAGTG
CCTCCACGCACAGTTCTTGGGGGAATTTCTGTCATCCTCGTGGTGTAGGA
TGCCACTACTCTGATGTCCAAGAGACCTGAGAGGCATATGATTGCCTTTT
ATAAATTGATACTACTTCTTAAAAAGAAAAATCAAGATCTTAGACTTGAT
ATCAGATGTTTCTCCCCTTTGCAGGATTATAGAAAATTTAAATTTTAAAT
GGCTTTTCTCAAGGCCTGGTAGTTTCTTCCTCTCCTCTCTATGTATGATG
TATTTGTGTATGCATGTTCATGTGTGTGCTTATCCTTATGTGGGTGAGCA
AGAGCCTCATAGTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGATAGA
GTTGGCCTTCTGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_j14.b1 MSMg01no320_j14.b1 CHROMAT_FILE:
MSMg01no320_j14.b1 PHD_FILE: MSMg01no320_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:08 2005
         (234 letters)



>mm_chr1_82433308_82433941
          Length = 634

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaagagaagctagagacgaggtagggaggcgaagactcctaggcaacccagaggcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaagagaagctagagacgaggtagggaggcgaagactcctaggcaacccagaggcttta 260

                                                                       
Query: 61  aaggaaagaacatggctgtgaggacccgaggatgaagagatcagagtattttaaacttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaaagaacatggctgtgaggacccgaggatgaagagatcagagtattttaaacttga 320

                                                                       
Query: 121 taaaacaagagaggaagccacgtgcccttctaggaggaagggatgggagcttctgagctc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaacaagagaggaagccacatgcccttctaggaggaagggatgggagcttctgagctc 380

                                                              
Query: 181 tggacatttgtgtttcttcctatgtatttagtttcacatactcagttcata 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggacatttgtgtttcttcctatgtatttagtttcacatactcagttcata 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)