BAC Information

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BAC

Clone NameMSMg01-320L20
Chromosome1 (Build37)
Map Location 67,547,532 - 67,547,671
singlet/doubletsinglet
Overlap genenone
Upstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320L20.T7 (MSMg01no320_l20.b1)MSMg01-320L20.TJ (MSMg01no320_l20.g1)
ACCAG439897AG439898
length736805
length of high quality
(start - end)
---140 (186 - 325)
definitionCHROMAT_FILE: MSMg01no320_l20.b1 PHD_FILE: MSMg01no320_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:19 2005CHROMAT_FILE: MSMg01no320_l20.g1 PHD_FILE: MSMg01no320_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGTCCCTTCTGATGGAACAGTTGTCACAAACTGTCTCCTCTTA
TTCATATACAAGGTTATACCCCGCAAAGTTGTAACGCAATGAAAGGCATT
TTAAGAAAGCATCATGAATAAGTGAGGTAGAATAAACAGAAGGAGAAGAA
GAAGAAGCTCTTTTTGCTTCCCAGGTGGCCATAGTTGAAGGGAGTAAAGC
CATATCAGTCTTAACAATAGAGCCAAGAAAACGGAGATAGACATCAAGCC
GTCTGGGAGGAACTGCCATATGGCCAGGACAAAGACAAAGGTGGCTGCAG
CCTACTGTTTTTTTTTGCCCCCCGCCCCCGCTGCAGGATCGGAGATCCGT
GCCTGTCTGACTTTCAATTCAAAAAAAACCATTTCTTTCGCGAGTTACTA
TTGGCGTTCTAGGTTCTAGGTCAAAGTATTTGTGTATAAAGAAGTGAAGT
TGGCATCACATCCTATTCGACTGCCATGTGCCGCCAAGAGGAATTTTAGC
TGCCTTATTTTACTAGTTTTGAACATTCCAGGTGTCTCCCAGCTATTTGA
GTCTGATTCAATTTGGTATTAACTCACTTTCATAAAATCCAGTTATCCCC
AATATCTCCTGTATAAACTTATTTGTTGATTTACCCTCTACATATGAAAT
TGCACCCTTTGGCAACAAGTTGCCCAAGAGGCTAAN
TTCCGGCCTCTTTGNTTCTCTCTGTTAGCCGGCCCCTAATTTTTTTTTCT
TCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCATTATTAAGTATCA
CAAATGAGGAGAACAATTTTTTTCCCACTAAATTATATAAGGGACAGTAT
CAAATGTCTAACAAGCGAACAAACACAAGTCTAGATAATGAAGGAACTAA
TGGAAAATCAAATGTTTGGGAAGATTTTTTTCACTGAGATGAAGCTTAGA
TCTGATTAGACACGATCGCTAGTATCTCACCTAACTCGAAGTGTTGGAAC
CAAGTTCCTGCAGCCTTGATTTATTCCCATAATGATGGACTATCTGTCGA
ATGGAGTGTTTTTATTATTTACCCACACCGCCCCCTTACTGGGTATGCAA
TCACAGGAAAGACGCTATGCTATGGAGAGAAAAATATTCATTTATCAGGC
AGTGAGATCATGGTTTCATAGATTTCCTATTTTGATATTAAATTCTTCAC
TTACATTTCCAATTTCCCATACTGATTTCCTAATTGTGTATTTTCAAGCT
AGTTCTTTGGACTAATTTTGACATGATGTTTAATTACGTTGTAATTTATA
AGGCATAATGGAAAAAATTTTCAAATAAGCTAGGAGTCAGATTATAAAAA
ACTGTAATTAGCAGTTTTTTAATTGATTTAATGCGTATGACTACTATAAT
TATCGGTCAATTTCTGACTCAAGTTTTAAGGGCAAATAAGGAAACGGTAA
AATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_l20.g1 MSMg01no320_l20.g1 CHROMAT_FILE:
MSMg01no320_l20.g1 PHD_FILE: MSMg01no320_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:19 2005
         (140 letters)



>mm_chr1_67547332_67547871
          Length = 540

 Score =  232 bits (120), Expect = 6e-66
 Identities = 135/140 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataagggacagtatcaaatgtctaacaagcgaacaaacacaagtctagataatgaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tataagggacagtatcaaatgtctaacaagcgaacaaacacaagtctagataatgaaaga 260

                                                                       
Query: 61  actaatggaaaatcaaatgtttgggaagatttttttcactgagatgaagcttagatctga 120
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 actaatggtaaatcaaatgtttgggaagttttttttcactgagatgaagcttagatctga 320

                               
Query: 121 ttagacacgatcgctagtat 140
           |||| ||| |||||||||||
Sbjct: 321 ttagtcacaatcgctagtat 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)