BAC Information

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BAC

Clone NameMSMg01-320M13
Chromosome1 (Build37)
Map Location 139,716,392 - 139,716,687
singlet/doubletsinglet
Overlap genenone
Upstream geneNr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320M13.T7 (MSMg01no320_m13.b1)MSMg01-320M13.TJ (MSMg01no320_m13.g1)
ACCAG439930AG439931
length739733
length of high quality
(start - end)
297 (69 - 365)239 (129 - 367)
definitionCHROMAT_FILE: MSMg01no320_m13.b1 PHD_FILE: MSMg01no320_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:22 2005CHROMAT_FILE: MSMg01no320_m13.g1 PHD_FILE: MSMg01no320_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCTAACAACCCTTCCAAGTACTCGCTGTGAGGTAAACTACATGACTGA
AAAACTACGCTAACTCATAGGCTCGCCAGGACGAAGAAAACCAACCAATT
GGTGTGGATACATAGTTAAAGAGACATATCTACTACAAGAGTAGGAATAC
TCGTCTCCAAACTGATGGGAAGTGCCTGGAAGCCATGCAATGGCTTGGGA
GGATGTCTATCAAATGGAAGGAGGACCAGATTTCCTCAGACTATCCTCAG
TGCAGAAACAGCATATCATGTTTTATATACGAGGGACAATCTCAGTTCTA
TTTAGTTGTATACATGCTTTTAGTTTTGGACGGCTCTGGAAAGATGGAAC
ATGCCTTGAAATAATAAATGTTATATACTCCAAACCAATGCCAATATGAA
AAATTGATACGGATGGAGAATTTGCTCTAGAATCAGGAGTGAAACAAGAT
GTTAGCTCCCATTTCTTATTCCATATAGTTCCAAAAGTCTTAGATATAAC
AATTACACAAGAGACAAGAAAATGACATAAAAGGAATAGCACTGAAAATG
GAAGAATTCAAACGATTATTTTCCTATGGCATAAAAGAGTTACAATATAC
AACTTCAAACTACACTATGGAGCTACAGTGATTTTAAAAGTCTGGTATTG
GTGTAAAACCTGGTAGTTAGACGACTGAAACAGAATAGG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTACCATCTCGGTAGTTTCTTAT
ATATTTATTTTTTTCATGTAATATACCTTATTAATTATAAATAATATAAT
CTTTAAAATATATAAATTGATTATGTTGATATAATAAGAATGGCCCCCAA
AGGCTCATTTGTTTAAATACTTGATCCCTAGTTGGTGGAACTGTTTGGGA
AGGATTAGGAAGTATGATCTTGTTGGAGGAGGTATATCAATTGGAGTAGG
CTTTGAAGCTTCAAAAGACTCATGTAATTCCCATCACCTTTTCTCTTCTT
CTTAGTTATAGACCATTATATTATAGCTATCACCTCTTCTCTGTTGCCAT
GCTTTTGCTTCTAACCCCCAGGAACCATAAACCTGGCTAAATCCTATCTT
TTATAAGTTTCCCTTTCATGATGTTTTGTCACAGCAATAGAAAAAGTAAC
CATGGTGGAATTTTGTACCAGAGAATAGGCAGTTGCTGTACGGACCTGAC
CATGCTGTCTCTGGATGAGTATTGAAAACACTGAAAATTTGTTCTAAAAA
AGCAGCTGAATGGTGTGAGCAGGGGATAATGAGCTTTTCTCATAATATAC
TGAAAGATACTAGAGCTGGGAGCTACAACTCTCTGCCCTGGTGGCCAGGA
TCGCACTGGCCGGCAATGTCCTATCTGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_m13.b1 MSMg01no320_m13.b1 CHROMAT_FILE:
MSMg01no320_m13.b1 PHD_FILE: MSMg01no320_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:22 2005
         (297 letters)



>mm_chr1_139716192_139716887
          Length = 696

 Score =  497 bits (257), Expect = e-145
 Identities = 287/297 (96%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtactcgctgtgaggtaaactacatgactgaaaaactacgctaactcataggctcgcca 60
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct: 496 agtacttgctgtgaggtaaactacatgactgaaaaactactctaactcataggct-gcaa 438

                                                                       
Query: 61  ggacgaagaaaaccaaccaattggtgtggatacatagttaaagagacatatctactacaa 120
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggacaaagaaaaccaaccaattgttgtggatacatagttaaagagacatatctactacaa 378

                                                                       
Query: 121 gagtaggaatactcgtctccaaactgatgggaagtgcctggaagccatgcaatggcttgg 180
           |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 377 gagtaggaatactcatctccaaactgatgggaagtgcctggaagacattcaatggcttgg 318

                                                                       
Query: 181 gaggatgtctatcaaatggaaggaggaccagatttcctcagactatcctcagtgcagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaggatgtctatcaaatggaaggaggaccagatttcctcagactatcctcagtgcagaaa 258

                                                                    
Query: 241 cagcatatcatgttttatatacgagggacaatctcagttctatttagttgtatacat 297
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cagcatatcatgttttagatacgagggacaatctcagttctatttagttgtatacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 696
Length adjustment: 9
Effective length of query: 288
Effective length of database: 687
Effective search space:   197856
Effective search space used:   197856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)