Query= MSMg01no320_m17.b1 MSMg01no320_m17.b1 CHROMAT_FILE:
MSMg01no320_m17.b1 PHD_FILE: MSMg01no320_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:23 2005
(296 letters)
>mm_chr1_128012451_128013146
Length = 696
Score = 542 bits (280), Expect = e-158
Identities = 289/292 (98%)
Strand = Plus / Minus
Query: 2 gggaaggtctgctttgcctcctaggcccagagctgggaggtctccactgaacccctgggc 61
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 493 gggaaggtctgctttgcctcctaggcccagagctgggaggtctccacagaaaacctgggc 434
Query: 62 aaggttgtcccacaagccagcagcagaagtgctgtcagctctactcagagtacctcaggt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aaggttgtcccacaagccagcagcagaagtgctgtcagctctactcagagtacctcaggt 374
Query: 122 ccctccggcccaggccatctgctgttctgcctttcttcggagagaagctggcaggtaccc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccctccggcccaggccatctgctgttctgcctttcttcggagagaagctggcaggtaccc 314
Query: 182 ctggtagtgatttgttctcattagctgggcatggcagtatgtgattttctgctaccaaag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctggtagtgatttgttctcattagctgggcatggcagtatgtgattttctgctaccaaag 254
Query: 242 agctgagggcagattccgagagccttatgggtagaggtatgtcccaggtatc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agctgagggcagattccgagagccttatgggtagaggtatgtcccaggtatc 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no320_m17.g1 MSMg01no320_m17.g1 CHROMAT_FILE:
MSMg01no320_m17.g1 PHD_FILE: MSMg01no320_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:23 2005
(551 letters)
>mm_chr1_127843567_127844513
Length = 947
Score = 876 bits (453), Expect = 0.0
Identities = 525/551 (95%), Gaps = 4/551 (0%)
Strand = Plus / Plus
Query: 1 ctttattctgtggttccaaaccatggctcccagtgatctctaaggaaccccagttcctga 60
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||
Sbjct: 201 ctttattctgtggttccaaatcatggctcccagtgatctctaaggaatgacagttcccga 260
Query: 61 gaatgccataattaaattggcttcttttggaggaaatgaaccagcctccatcccattagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgccataattaaattggcttcttttggaggaaatgaaccagcctccatcccattagc 320
Query: 121 tcgaccttgggtgaatataagaaacagtgaactcaggaagaaagccttctagtatggaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgaccttgggtgaatataagaaacagtgaactcaggaagaaagccttctagtatggaac 380
Query: 181 tgtcctctagctgcaatagagcacaaggatgcttttgccaagcccgtccctgctggcttg 240
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 381 tgtcctctagctgcaatagagcacaaggatgctttcaccaagcccatccctgctggcttg 440
Query: 241 gctactgtgggacatacatgcaggtttgcattctccccaacagactgttttcttcttttc 300
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 gctattgtgggacatacatgcaggttcgcattctccccaacagactgttttcttcttttc 500
Query: 301 accaccgcacatttaacctagtgtcatcttttccaaaatttttacatggggagggatgaa 360
| | ||||||||||||||||| |||||| |||||||||| || ||||||| ||||
Sbjct: 501 agtattgcacatttaacctagtgccatcttctccaaaatttctagatgggga----tgaa 556
Query: 361 tatacatgtatgaaattatcaaaaagggtaattaatgaaaatatctgatttttattgtta 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatacatgaatgaaattatcaaaaagggtaattaatgaaaatatctgatttttattgtta 616
Query: 421 gagggaaagaattctttgaagggagtgatcaattgttaaaactagttgagaagccacata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gagggaaagaattctttgaagggagtgatcaattgttaaaactagttgagaagccacata 676
Query: 481 tataactataattgaacatctccattaagaaaccattcaaccaacaaaaattctgcccat 540
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 677 tataactataattgaacatctccacaaagaaaccattcaacaaacaaaaattctgcccat 736
Query: 541 cctccctccaa 551
|||||||||||
Sbjct: 737 cctccctccaa 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 947
Length adjustment: 10
Effective length of query: 541
Effective length of database: 937
Effective search space: 506917
Effective search space used: 506917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
