BAC Information

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BAC

Clone NameMSMg01-320N09
Chromosome1 (Build37)
Map Location 70,758,290 - 70,942,346
singlet/doubletdoublet
Overlap geneSpag16, A830006F12Rik, LOC100043210
Upstream genenone
Downstream geneEG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320N09.T7 (MSMg01no320_n09.b1)MSMg01-320N09.TJ (MSMg01no320_n09.g1)
ACCAG439970AG439971
length716720
length of high quality
(start - end)
335 (380 - 714)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no320_n09.b1 PHD_FILE: MSMg01no320_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:26 2005CHROMAT_FILE: MSMg01no320_n09.g1 PHD_FILE: MSMg01no320_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,758,290 - 70,758,622)(70,942,066 - 70,942,346)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACTTTCAGAATACCGAATGGCTGAGAAGCACCTGAAAAACTGT
TCAGCATCCTTAATTATCACCGAAACGCAAATCAAAACAACCCTGAGATT
CTACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCAAGGATGTGGAGAAAGAGGAACATTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAATACTACCGGAGGATCCCGCAATCCCTCTCTTGGGCA
TATATCCTTATTTATGCCCCACCTGCCAAGAAGGACGCATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATATCATTGCTTTCTTTTAAACATACTT
GCATATTTAATATCTTCAGATAGCAACATTTGTCTCTATGAGTTAACAGA
ATTACTCAAATGGACTGTCAACATGCCTAATTCCAGAGCATTCTACATAT
CTCTGATGATAGTGAAACATATAAGTTCTACATATAAAAATGACCATAGG
ATAGTAACAATATTAATATTATTATATGATTAATATTTTGAAAAAATTTG
AAAGATATTCTTAAAATATAGCCCTAGCCAGCCTACAACTTACTATGCAG
ACCAGCCTGGCCTTCA
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAATGACATGCTCTCCGTGTCAA
CCATAGGTTAGAAACAGGCACCGAGTACAACCATTATGTTAACAATTCCT
GATGGAGACACATCAAAGCAAAATGTGAAAATTTTAAGATAGAGAACACC
AGTTTATGGGAACCAGTTAAAATCCCAGGATTGTATGATTTATTGCTGTC
ATACATAATAATAAGTGCTATAAATATGCTTGATGTATTAGACATGTAAA
TTTATGTGTAGATTATTACTAATAACTAATGACTGTCAGATCAAGTCATT
CACAGTCTTCATAGTGAACCCCCCCCCCCCTTTGGAATCTCTCTCATAAG
AAAGAAACTTCTTAAGAAAAATGCAATAAAATAGAGAGATGGCTCAGTGA
TTGAAGAACTTGATGCCAAGTGTGGGAACAGGGGTTTCAGATGCACAGAA
GTTACACACAATGGCAGGTGAATATGATAACCTGATTGCAATTCTAGCCT
CAAAAGTGGAGACAGGGCATCTCCATAGCAAGCTCTCTGGTAAGACTAAC
CATATGGGTGTGGCCCTATCTCAGTGAATGAAGTGGACAGGTCATTGGGG
ATAATTCCTAACATCTACCTTATATTTCCACACGCACAACCACACACACA
CACACTCTGTCTCACATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_n09.b1 MSMg01no320_n09.b1 CHROMAT_FILE:
MSMg01no320_n09.b1 PHD_FILE: MSMg01no320_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:26 2005
         (335 letters)



>mm_chr1_70758090_70758824
          Length = 735

 Score =  559 bits (289), Expect = e-164
 Identities = 323/335 (96%), Gaps = 2/335 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaggacgcatgctccactatgttcatagcagccttatttataatatcattgctttcttt 60
           ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 201 gaaggacacatgctccactatgttcatagcatccttatttataatagcattgctttcttt 260

                                                                       
Query: 61  taaacatacttgcatatttaatatcttcagatagcaacatttgtctctatgagttaacag 120
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tacacatacttgcatatttaatatcttcagatagcaacatttttctctatgagttaacag 320

                                                                       
Query: 121 aattactcaaatggactgtcaacatgcctaattccagagcattctacatatctctgatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattactcaaatggactgtcaacatgcctaattccagagcattctacatatctctgatga 380

                                                                       
Query: 181 tagtgaaacatataagttctacatataaaaatgaccataggatagtaacaatattaatat 240
           ||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 381 tagtgaaacatgtaagttctacatataaaaatgaccacaggacagtaacaatattaatat 440

                                                                       
Query: 241 tattatatgattaatattttgaaaaaatttgaaagatattcttaaaatatagccctagcc 300
           ||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tattat--gattaatattttgaaaaagtttgaaagatattcttaaaatatagccctagcc 498

                                              
Query: 301 agcctacaacttactatgcagaccagcctggcctt 335
           |||||||||||||||||||||||||| ||||||||
Sbjct: 499 agcctacaacttactatgcagaccaggctggcctt 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no320_n09.g1 MSMg01no320_n09.g1 CHROMAT_FILE:
MSMg01no320_n09.g1 PHD_FILE: MSMg01no320_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:26 2005
         (281 letters)



>mm_chr1_70941866_70942546
          Length = 681

 Score =  520 bits (269), Expect = e-152
 Identities = 278/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatgacatgctctccgtgtcaaccataggttagaaacaggcaccgagtacaaccatta 60
           ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 481 ttaatgacatgctctccatgtcaaccataggttagaaacaggcagtgagtacaaccatta 422

                                                                       
Query: 61  tgttaacaattcctgatggagacacatcaaagcaaaatgtgaaaattttaagatagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgttaacaattcctgatggagacacatcaaagcaaaatgtgaaaattttaagatagagaa 362

                                                                       
Query: 121 caccagtttatgggaaccagttaaaatcccaggattgtatgatttattgctgtcatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caccagtttatgggaaccagttaaaatcccaggattgtatgatttattgctgtcatacat 302

                                                                       
Query: 181 aataataagtgctataaatatgcttgatgtattagacatgtaaatttatgtgtagattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aataataagtgctataaatatgcttgatgtattagacatgtaaatttatgtgtagattat 242

                                                    
Query: 241 tactaataactaatgactgtcagatcaagtcattcacagtc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tactaataactaatgactgtcagatcaagtcattcacagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)