ACATATACCGGACCTTAAAAGTCTTGGCCTTTCATTCATTGTTTAACGTG
GGTTAGCCGGGGCGGACGAGCACGAGCCCATAAAAAAACTAGTCGTCTCC
TTGCACCCCCTCTACTCCCATTGGGAGGGAGAACCCCCCTGTTTTCCTGG
ATAATTACCTTGCACAAATAATAGGTTGGTGGGGGGTAGAAGCGCGGGAA
GATGTNNNNNNNCCGGGGGGGGGGGGGGGGGGGGGTGGGGGCGGGGGGGT
TCCCGGGGGGGTGGGGGGGGGGGGTGGGGAGTCTNNCGAGGAGAGGGAGG
GGNAAANACGCTTCCGAAGAAGAAATTGGGCGGGCCGGCTGAAAAGNAAC
TCACTAATAAGGGGCTGCAGGAAAGACGAAGGGAAAATTCCCTTCAGGNC
AAACAAAGGTGGGTACCACGGNGGGGCCCCAAAAAAAAGTCGGGGGGGCN
TTGTTCCTAGGAAGCCCAAGGGCTTGGGGNCCGGTGAAAAAACCCGCCAG
AGGGGGTGTTTTTCGGGGGGGAAAAAAAAAGAGTGGGGGGAAAAGGGGGG
GGTTGCGCCCAAAAAGAGAGGGGAAAGCCTAGACCCTTGGGGGGGAAAAA
AAAAGAAACAGCTTTTTTGGGGGGGGGGAAAATAAAAACAGGGGCCAC

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGGATGTGAAATCCTTCACAAA
GAGACATTGAGCAAAGCAAATCAATATTTAAAGCATCCTGCAGCTAGGTA
AGTTAGCCTGAACCTAGCACGGATCTACAAAGACTAACTGTTAGTAGGGC
TACAGACTCCTTGTCAGAAGTCATGAAGAACCTTGTCAACCTGACAGTCT
TTTAGGCTACACAATGTAATCTTGAGTTTCTTAAGCTTTTTGATTTTTTT
GAGTATCTAATTTGGCCTTACACCAAGCTGAGTACGCCATTATATAATTT
TTCTTTCATATTGGTCAATTTACTAAATAATAAAGATATTTCACAGTGGC
CTAGTTTCTTTAAAACTAAAACTATATGCATACATATATATTGTATATAT
AATATTGGTTTTGAATATTTTTATTAAGACTATTTGATTGAGGATAATAT
CATCTTACATATATTTACCATAATTCTTGCAGCCACATGACAAAAGAAAA
TTATTTTAATGTAAAAATACCCCAAAGGTTGTATTTACTTTTTCAACTAA
GAAATAATATGTAACTTATCAGAAAAATAGCAAAAATAATTTCACAGGGA
AGAATTTCAAATATACAGACTTTCTGAAGAAAGACCGCCCTAGTCATCAT
CTGAAAACAGAAATTACTTTATTTTT

Query= MSMg01no321_b01.g1 MSMg01no321_b01.g1 CHROMAT_FILE:
MSMg01no321_b01.g1 PHD_FILE: MSMg01no321_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:43 2005
         (598 letters)



>mm_chr1_70606562_70607561
          Length = 1000

 Score =  810 bits (419), Expect = 0.0
 Identities = 493/519 (94%), Gaps = 6/519 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   aggatgtgaaatccttcacaaagagacattgagcaaagcaaatcaatatttaaagcatcc 61
           ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct: 202 aggatgtgaaatccttcaccaggagacattgagtaaagcaaatcaatatttaaagcatcc 261

                                                                       
Query: 62  tgcagctaggtaagttagcctgaacctagcacggatctacaaagactaactgttagtagg 121
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 262 tgcagctaggtaagctagcctgaacctagcacagatctacaaagactaactgttagtagg 321

                                                                       
Query: 122 gctacagactccttgtcagaagtcatgaagaaccttgtcaacctgacagtctttt-aggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 322 gctacagactccttgtcagaagtcatgaagaaccttgtcaacctgacagtctttttag-c 380

                                                                       
Query: 181 tacacaatgtaatcttgagtttcttaagctttttgatttttttgagtatctaatttggcc 240
           | |||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct: 381 tgcacaatgtaatcttgagtttcttaagctttttgatttttt-gagtacctattttggcc 439

                                                                       
Query: 241 ttacaccaagctgagtacgccattatataatttttctttcatattggtcaatttactaaa 300
           |||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 ttacaccaaggtgactaccccattctataatttttctttcatattggtcaatttactaaa 499

                                                                       
Query: 301 taataaagatatttcacagtggcctagtttctttaaaactaaaactatatgcatacatat 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taataaatatatttcacagtggcctagtttctttaaaactaaaactatatgcatacatat 559

                                                                       
Query: 361 atattgtatatataatattggttttgaatatttttattaagactatttgattgaggataa 420
           |||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 560 atattgtatatataatgttggttttgaatatttctattaacactatttgattgaggataa 619

                                                                       
Query: 421 t---atcatcttacatatatttaccataattcttgcagccacatgacaaaagaaaattat 477
           |   ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 620 tgatatcatcttatatatatttactataattcttgcagtcacatgacaaaagaaaattat 679

                                                  
Query: 478 tttaatgtaaaaataccccaaaggttgtatttacttttt 516
           |||||||||||||||||||||||||| ||||||||||||
Sbjct: 680 tttaatgtaaaaataccccaaaggttttatttacttttt 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1000
Length adjustment: 10
Effective length of query: 588
Effective length of database: 990
Effective search space:   582120
Effective search space used:   582120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)