BAC Information

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BAC

Clone NameMSMg01-321C15
Chromosome1 (Build37)
Map Location 41,357,365 - 41,357,757
singlet/doubletsinglet
Overlap geneLOC100041441
Upstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321C15.T7 (MSMg01no321_c15.b1)MSMg01-321C15.TJ (MSMg01no321_c15.g1)
ACCAG440207AG440208
length728726
length of high quality
(start - end)
368 (45 - 412)333 (76 - 408)
definitionCHROMAT_FILE: MSMg01no321_c15.b1 PHD_FILE: MSMg01no321_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:50 2005CHROMAT_FILE: MSMg01no321_c15.g1 PHD_FILE: MSMg01no321_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATCTGACCAATACTGAATGGCAGAGAAGCCCCTGAAAACATGTT
CAACATCCTTAACCATCAGGCCAAATGCAAATCAAAACAACCCTGAGATT
CTACCTCACACCAGTCAGAATGGCTAACATCAAAAATTCAGGTGACAGCA
GATGCTGGTGAGGATGTGGAGAAAGAGGAACAGTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTAG
AAAATTGGACATAGTACTACTAGAGGATCCAGCAATACCTCTCCTGGACA
TATATCCATATTATGTCCCAACCGCTAAGAAGGACAAATGCTCCACTAAG
TTCATAGCAGCCTCACCCATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCTGGTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTTGGAGGGCATCTTCCTGAGTGAGGTAACACAATCACAAA
GGAACTCATACAACATGTACTCACTGATAAGTGGATATTAACCCATAACT
TAGGATAGCCCAGATACAAGACACAATTTGCTAATCGCATGACACCCTAT
AAGAATGAATACCAAAGTGTTGACTCTG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGATAGCTATATGTAATAACATGGG
GAAGAGATTCACTAGATGGAGTCTAATTATAATGGTGAGCATGATTTGAA
ATTGGATAGAATATACACTATAAATGAGGACTCTCTTCCTAAGTCATTAC
TTTATGGATTATTATATAAATGCTAAAGTGTACATTGCAGACATTTGCTT
TCTTTGCAGATATATGTGTGTGTGTGTGTGTGTGTATACAAATGTCTGCA
AAGAAAGCAAATACACACACATATATATATATTGGTGGTCAAAGTCTTAA
CTTTTCAAGAAGTCCCTGGTTAGCATTACCTACAGGCCACCCAGTAAAAC
ATCGTAGTTCTTACCACCCAAGGACTCATGGGATCAGCAACATTAGCTCA
CAAAGCTAACATTTGCTATGCATGCTTGGTATCATCAGGCCCCAGCAACC
TCACAAGGTTGGGAGGAGAGAGTGACTTGATCTCCATGAGGCTGACCTCT
GACTTCTACATATGCATTATGGTGCATATGCGTTCTGCCCACACCATATA
CTGTAATACATAGACCCCATTACATTACCATTGTCTAATAATTTTGTTTT
CTTTCCTATTGCCGTTTTCATTCCCCTTTTTTGTTCCCCCCTACATATAA
CCTATAATATTTCCCTCCCCCGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_c15.g1 MSMg01no321_c15.g1 CHROMAT_FILE:
MSMg01no321_c15.g1 PHD_FILE: MSMg01no321_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:50 2005
         (333 letters)



>mm_chr1_41357165_41357897
          Length = 733

 Score =  505 bits (261), Expect = e-147
 Identities = 331/393 (84%), Gaps = 60/393 (15%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatagctatatgtaataacatggggaagagattcactagatggagtctaattataatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatagctatatgtaataacatggggaagagattcactagatggagtctaattataatgg 260

                                                                       
Query: 61  tgagcatgatttgaaattggatagaatatacactataaatgaggactctcttcctaagtc 120
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 261 tgagcatgatttgaaattggatagaacatacactataaatgagaactctcttcctaagtc 320

                                                                       
Query: 121 attactttatggattattatataaatgctaaagtgtacattgcagacatttgctttcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attactttatggattattatataaatgctaaagtgtacattgcagacatttgctttcttt 380

                                                                       
Query: 181 gcagatatatgtgtgtgtgtgtgtgtgtgt----atacaaatgtctgcaaagaaagcaaa 236
           ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||
Sbjct: 381 gcagatatatgtgtgtgtgtgtgtgtgtgtgtgtatacaaatgtctgcaaagaaagcaaa 440

                                                                       
Query: 237 tacacacaca-------------------------------------------------- 246
           ||||||||||                                                  
Sbjct: 441 tacacacacacacacacacacacacacacacacacacacacacacacacatatatatata 500

                                                                       
Query: 247 ------tatatatatattggtggtcaaagtcttaacttttcaagaagtccctggttagca 300
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatatatatatatattggtggtcaaagtcttaacttttcaagaagtccctggttagca 560

                                            
Query: 301 ttacctacaggccacccagtaaaacatcgtagt 333
           |||||||||||||||||||||||||||||||||
Sbjct: 561 ttacctacaggccacccagtaaaacatcgtagt 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)