Query= MSMg01no321_d21.b1 MSMg01no321_d21.b1 CHROMAT_FILE:
MSMg01no321_d21.b1 PHD_FILE: MSMg01no321_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:56 2005
(276 letters)
>mm_chr1_153732742_153733420
Length = 679
Score = 414 bits (214), Expect = e-120
Identities = 269/303 (88%), Gaps = 27/303 (8%)
Strand = Plus / Plus
Query: 1 ggaattctcaagcagagttccccagccctgtggctggaaaagccgccctcagcctccagc 60
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattctcaagcagagaggcgcagccctgtggctggaaaagccgccctcagcctccagc 260
Query: 61 ctctctggggacctcaccccatgtgaatctctgcctagctttctggtcaagctagcttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctctctggggacctcaccccatgtgaatctctgcctagctttctggtcaagctggcttat 320
Query: 121 tacttattgctagtattctaatggatcgaattctgcttcttctacctagaacttgtctt- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tacttattgctagtattctaatggatcgaattctgcttcttctacctagaacttttcttc 380
Query: 180 tt--tttttataggagagaga-a-----------------------agagagagaganag 213
|| ||||||||||||||||| | ||||||||||| ||
Sbjct: 381 ttcttttttataggagagagagagagagagagagagagagagagagagagagagagagag 440
Query: 214 agagagagagagagacccactgctgtgaactgaataggttctttggaaaccctaaaaggc 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagagagagagagacccactgctgtgaactgaataggttctttggaaaccctaaaaggc 500
Query: 274 act 276
|||
Sbjct: 501 act 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 679
Length adjustment: 9
Effective length of query: 267
Effective length of database: 670
Effective search space: 178890
Effective search space used: 178890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no321_d21.g1 MSMg01no321_d21.g1 CHROMAT_FILE:
MSMg01no321_d21.g1 PHD_FILE: MSMg01no321_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:56 2005
(640 letters)
>mm_chr1_153885513_153886552
Length = 1040
Score = 820 bits (424), Expect = 0.0
Identities = 514/552 (93%), Gaps = 18/552 (3%)
Strand = Plus / Minus
Query: 1 ctttttcctggggagtgcatactgctaacacgcttttcatctgaaggtgttagctctaac 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctttttcctggggagtgcagactgctaacacgcttttcatctgaaggtgttagctctaac 490
Query: 61 tcatagttcttccttctcatgatgccgctttacgtagagatcccaggcaaaggaagatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcatagttcttccttctcatgatgccgctttacgtagagatcccaggcaaaggaagatct 430
Query: 121 ctgaccctttctctgagttctgtccccagagttatgctcaccattgctccagtctgctat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 429 ctgaccctttctctgagttctgtccccagagttatgctcaccattgctccagtccgttat 370
Query: 181 tctcaagcgcagcaggctccgggtcacccacttactagcttgtagactctggagggagtc 240
|||||| | ||||||||||| |||||||| |||||||||| | |||||||||||||||||
Sbjct: 369 tctcaaccacagcaggctccaggtcacccgcttactagctgggagactctggagggagtc 310
Query: 241 atattcaattctaatctagttccttttaatctgaagatgaacgtgcaatagctatgcata 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 309 atattcaattctaatctagttccttttaatctgaagatgaacgtgcaatagctatgcaga 250
Query: 301 aaacatgtgcaggtcacatgattgccattaggagaacgagtgaactact-----c---cc 352
|||||||||||||||||||||||| ||| | ||||||||| |||||||| | |
Sbjct: 249 aaacatgtgcaggtcacatgattgtcatgaagagaacgagagaactactttatgctgtca 190
Query: 353 cgccgc---cactgaatgctcacagggaggaggagggtagcccagtgga----ggcagac 405
| | | |||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct: 189 ctcagggaacactgaatgctcacagggag-a--agggtagcccagtggatggaggcagac 133
Query: 406 aaggagtctaaaaattaagagtttccaagctgaggcgaccccgatggtacctgctgagtt 465
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 132 aaggcgtctaaaaattaagagtttccaatctgaggcgaccccgatggtacctgctgagtt 73
Query: 466 ctcagtgtggaaacacctagaacgattcagcattggttcaagggtcacatgaactgtgat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 ctcagtgtggaaacacctagaacgattcagcattggttcaagggtcacatgaactgtgat 13
Query: 526 ttgtgctgagac 537
||||||||||||
Sbjct: 12 ttgtgctgagac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
