BAC Information

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BAC

Clone NameMSMg01-321F10
Chromosome1 (Build37)
Map Location 147,103,906 - 147,280,788
singlet/doubletdoublet
Overlap genenone
Upstream geneEG639456, Rgs21, Rgs18, LOC667877, LOC625057, LOC383570
Downstream geneLOC383571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321F10.T7 (MSMg01no321_f10.b1)MSMg01-321F10.TJ (MSMg01no321_f10.g1)
ACCAG440334AG440335
length741739
length of high quality
(start - end)
323 (44 - 366)339 (75 - 413)
definitionCHROMAT_FILE: MSMg01no321_f10.b1 PHD_FILE: MSMg01no321_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:03 2005CHROMAT_FILE: MSMg01no321_f10.g1 PHD_FILE: MSMg01no321_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,280,469 - 147,280,788)(147,103,906 - 147,104,244)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGTCTTCTCCTGTTTCTACACTTTATTCTTGACCAGTTTCCTTCT
TCTTCATGGGCTAAGGGCATTGCTGAAATCCTCAGGTCCAGTCTCTGAGA
CCTGGAGTCAAGCATATGTGATATAGCTATAAAGGACTATGAGGCACTGC
CTTTAATCCTGTGAGTCTTCATATCCAAAAATGGCATTGCTACTCATCCC
TTTGTAACTGCCATAATCTTACCTTAACTTACCAGGCAATGCTTTCTGTG
CAAAGTGATGGCCACTGATTCTCTCAACCACTCCCAGAAATAGGAGTTTT
TCATCAGCTTGTCATCAATGTATAGGTCTTTCACTCCTTCCATCATGAAA
GTTGAGGCTGATACACTCCCCCCCACAGAAATTAAAACTACTGGTCTAAA
GACACTAAGTTACATAGTTGCTCTAGCTGAAGTTTGTAAACAGAGAACAT
ATTTTGAGACTCAGTTATTCAACTTAATAATTTTTGCTGTAGTAATAATC
ATATAAATGAGAATTTTTGAACATCTCTGTTAATTAATATGAAGACTTTA
TCTAACTATATATAATAGATAGAACTGTCTATCATTTCATCAAGTATCAA
CCTGTCGAAAAACATGAAACGATATTTACTGAAGTTTCTTCAATTCTTTC
ATACTGGAAGCACTTTTTCAACTTTATTACTATAATGCAAA
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTATAAAATCTGACTGTTACTAA
ATGTGTAGTGACTGCTATTTGGAAAGTTATGACTGTTGCTAGGAGTGCCT
TGGTCCCTGGAAAAAGCTGTGGTTTTTCCAATAACTGAGATCATCCTGAA
GATAAGCTTAATGTAAGCTAGAGTTTAAATACAAAATGGAACTTATAATG
TTAGGCTGGGCCCTTCAACCAGTATTCCTTTACATCATATACAGCTTCAA
GCTCTTGGCCTACTGTGGAACCATAATCTTTTCCAAGGTTTGAGACCAAT
AAGTATGTAATGCTTCTTAGAGAAGTTCTTTTATCTTCAGATAAGTCTCC
CAGTGTGAAGTAATCTCACCCCCCACGACAATCTTATTATATACTGAAAA
TAAAACCACACACACAGTGAAATATTCATCAAACAGCAATGAATTTGCTT
CTGCAAACAGGTGATGTGTGGCGCCTTCTGGAATAGTGAGAGTGATGTTG
ATCTCATGAGCCTCTTGCTCAAGCAACTTCCTCAGCATGATATTACCCAG
TTATGGTCCAGACTTGTTGATGATGTTGCTACACATATACAGCTGATTTT
GTGGCCCCAGACTCCAAAATCAGTTTTTGTATATTCCTCCTTAATATTCC
CCTTTTCCATATTCCATGTCTACTGTTGTCGCTCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_f10.b1 MSMg01no321_f10.b1 CHROMAT_FILE:
MSMg01no321_f10.b1 PHD_FILE: MSMg01no321_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:03 2005
         (323 letters)



>mm_chr1_147280266_147280988
          Length = 723

 Score =  596 bits (308), Expect = e-175
 Identities = 317/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattgtcttctcctgtttctacactttattcttgaccagtttccttcttcttca 63
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggaattcattgtcacctgctgtttctacactttattcttgaccagtttccttcttcttca 464

                                                                       
Query: 64  tgggctaagggcattgctgaaatcctcaggtccagtctctgagacctggagtcaagcata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgggctaagggcattgctgaaatcctcaggtccagtctctgagacctggagtcaagcata 404

                                                                       
Query: 124 tgtgatatagctataaaggactatgaggcactgcctttaatcctgtgagtcttcatatcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgtgatatagctataaaggactatgaggcactgcctttaatcctgtgagtcttcatatcc 344

                                                                       
Query: 184 aaaaatggcattgctactcatccctttgtaactgccataatcttaccttaacttaccagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaaaatggcattgctactcatccctttgtaactgccataatcttaccttaacttaccagg 284

                                                                       
Query: 244 caatgctttctgtgcaaagtgatggccactgattctctcaaccactcccagaaataggag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 caatgctttctgtgcaaagtgatggccactgattctctcaaccactcccagaaataggag 224

                               
Query: 304 tttttcatcagcttgtcatc 323
           ||||||||||||||||||||
Sbjct: 223 tttttcatcagcttgtcatc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no321_f10.g1 MSMg01no321_f10.g1 CHROMAT_FILE:
MSMg01no321_f10.g1 PHD_FILE: MSMg01no321_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:03 2005
         (339 letters)



>mm_chr1_147103706_147104444
          Length = 739

 Score =  632 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccttataaaatctgactgttactaaatgtgtagtgactgctatttggaaagttatgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccttataaaatctgactgttactaaatgtgtagtgactgctatttggaaagttatgact 260

                                                                       
Query: 61  gttgctaggagtgccttggtccctggaaaaagctgtggtttttccaataactgagatcat 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgctaggagtgtcttggtccctggaaaaagctgtggtttttccaataactgagatcat 320

                                                                       
Query: 121 cctgaagataagcttaatgtaagctagagtttaaatacaaaatggaacttataatgttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgaagataagcttaatgtaagctagagtttaaatacaaaatggaacttataatgttag 380

                                                                       
Query: 181 gctgggcccttcaaccagtattcctttacatcatatacagcttcaagctcttggcctact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgggcccttcaaccagtattcctttacatcatatacagcttcaagctcttggcctact 440

                                                                       
Query: 241 gtggaaccataatcttttccaaggtttgagaccaataagtatgtaatgcttcttagagaa 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 441 gtggaaccataatcttttccaaggtttgagaccaataagtatgcaatgcttcttagagac 500

                                                  
Query: 301 gttcttttatcttcagataagtctcccagtgtgaagtaa 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttcttttatcttcagataagtctcccagtgtgaagtaa 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)