BAC Information

Click to search

BAC

Clone NameMSMg01-321H24
Chromosome1 (Build37)
Map Location 84,206,789 - 84,207,080
singlet/doubletsinglet
Overlap gene5033414K04Rik
Upstream gene4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321H24.T7 (MSMg01no321_h24.b1)MSMg01-321H24.TJ (MSMg01no321_h24.g1)
ACCAG440452AG440453
length746743
length of high quality
(start - end)
237 (129 - 365)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no321_h24.b1 PHD_FILE: MSMg01no321_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:15 2005CHROMAT_FILE: MSMg01no321_h24.g1 PHD_FILE: MSMg01no321_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGGATCCGCGGAAT
TCAAAGTCAGTCTTGACTACATAAGACCCTATCTCAACAGGGACAGCATT
CTAATGCAACTCCTTTCCATAGTTCTCAGGTCGGCATCCCAGGTTTTTCA
GTCCTGTCCTTGAGTGTTACTTTGCTTCACCAACTGCGTTCCTTTATGGA
ATTTTCCAACTAGACATTATTTGTTTTGTTTTGTTTTGTTTTTTTCCTTT
TAAACTTTGTTTCATTAGTTACAAAGGCCATCTGTTTCCTTTCATCAAAC
TGCTTTTGAACCTTGGTCAAAAATTTTTTGGCAATATTTGTGTTGGTCTA
TTTTGAGTTCTTTTTACTTAAATGTCCCNGACGTGCCCGTTCAATTGCCA
ATACAGCCTTGACATCTACCCCCCCCCGCAAATAAATAACTTTTAGGAGT
GGACAGGTGAACTCTTACTACATCATCCTCTCCTCCTCTTTCTGGTCATT
GTATGTTAACACTGTGAGTGGTGGGGCTAGTTTTATAATGCCAACCTTTT
TATGTTGATCACTTTGTTTTGGCCCTCTACTGGAGTGATTATTGTGTCTT
GCTGCTAAGATGGGACCCTTGGTGGCTTCACTGAGGCATTCTGAGCAGTA
AACCTTGAATTCCTCCTCCTCTGATTCAAGCTTGGGAATTTTTGTCTCTC
ACTCTAGTTGCAAGACTTTTAGAATTCACTGCACACATGTTTTTTA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCAATACAGTCCCTATCGCATCTTGGTCATGCTCAA
AATACAGATGGACATTCTCAGTTCCGCTAGCATCCAACTTAGGGTTTGTG
CATCTTTCCTTTGTCTATCTGGGAGACAAATGCTTTCTGCAGGGTAGATG
CTCAAAATACCCTTCAGATGTGATTTGCTCTATCCCTGATCAGAAATAAT
GATAAATACCAAGATAATGACTGCTTGGATATTACTGTAATAGTCTACAA
TTCAGACCTGTTGGAACAAGAGGACCTAAGGTAGTGAACAGTATTGGAAG
CCATTACAGCATGATTTTTTGGTTTAATAGATTTGCTAAACATCTACTCC
CTTCTTAACCTTAGGAAAGCCCCCCCCGCTGGAACTGATAAACTGGTCAA
CTTTAGAATGATCAGCGGGATTCAGGTCCACATATATGTCTGTTGTTTAT
TGCCAGGACTACAGTTAAGGACAAGCAGGGCTAAACAAATTATTTAAATG
AGTCCTTAGTAATGTACATGTGTGTGTCCAGTGGGAGGTACTTGCGTTAA
GTGTCCATGTGGAAGCCAGAGGATAGTCTCAGGTGCTAACCCAAGAATGC
CATTATTCTTTGGAAATAGGCTCTCTCGTTGGCATGTAGCTCACCAATTG
GGCTAGACTGCCTGTGCTCGAGGCTCAGGTCTCTTGTCCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_h24.g1 MSMg01no321_h24.g1 CHROMAT_FILE:
MSMg01no321_h24.g1 PHD_FILE: MSMg01no321_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:15 2005
         (292 letters)



>mm_chr1_84206589_84207281
          Length = 693

 Score =  497 bits (257), Expect = e-145
 Identities = 284/293 (96%), Gaps = 3/293 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccta-tcgcatcttggtcatgctcaaaatacagatggacattctcagttccgctagca 59
           |||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tccctact-gcatcttggtcatgctcaaaatacagatggacattcccagttccgctagca 259

                                                                       
Query: 60  tccaacttagggtttgtgcatctttcctttgtc-tatctgggagacaaatgctttctgca 118
           ||||||||||||||||||||||||||||| |||  ||||||||||| |||||||||||||
Sbjct: 260 tccaacttagggtttgtgcatctttccttcgtcaaatctgggagactaatgctttctgca 319

                                                                       
Query: 119 gggtagatgctcaaaatacccttcagatgtgatttgctctatccctgatcagaaataatg 178
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 320 gggtagatgctcaaaatacccttcagatatgatttgctctatccctgatctgaaataatg 379

                                                                       
Query: 179 ataaataccaagataatgactgcttggatattactgtaatagtctacaattcagacctgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataaataccaagataatgactgcttggatattactgtaatagtctacaattcagacctgt 439

                                                                
Query: 239 tggaacaagaggacctaaggtagtgaacagtattggaagccattacagcatga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggaacaagaggacctaaggtagtgaacagtattggaagccattacagcatga 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)