Query= MSMg01no321_l22.b1 MSMg01no321_l22.b1 CHROMAT_FILE:
MSMg01no321_l22.b1 PHD_FILE: MSMg01no321_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:33 2005
(653 letters)
>mm_chr1_32689713_32690765
Length = 1053
Score = 1141 bits (590), Expect = 0.0
Identities = 635/650 (97%), Gaps = 1/650 (0%)
Strand = Plus / Plus
Query: 5 gaattccttgagacccttgcccggaacaaatgagaagcagaggggcctggcagggaacac 64
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccttgagacccgagaagggaacaaatgagaagcagaggggcctggcagggaacac 263
Query: 65 atcagcttttccaaaggcctcatccttcagcagtgctaatgaggccaccatctagaggct 124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcagcttttccaaaggcatcatccttcagcagtgctaatgaggccaccatctagaggct 323
Query: 125 ctgctttgtgcaagatgtctagaaacagaagtgtagctcagaattgcatcttcccagtta 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 ctgctttgtgcaagatgtctagaaacagaagtgtagctcggaattgcatcttcccagtta 383
Query: 185 gtgtggttttctttctttttttc-tttttttttattatgtattttcctcaattacatttc 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgtggttttctttctttttttcttttttttttattatgtattttcctcaattacatttc 443
Query: 244 caatgctatcccaaaagtcccccacacacccccactcccctacctacccattcccatttt 303
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 444 caatgctatcccaaaagtcccccacacccccccactgccctacctacccattcccatttt 503
Query: 304 ttggccctggctttcccctgtactggggcatataaagtttgcctgaccaatgggcctttc 363
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttggacctggctttcccctgtactggggcatataaagtttgcctgaccaatgggcctttc 563
Query: 364 tttccattgatggccgaccacgccatcttttcatacctatgcagctagagtcaaggtatt 423
|||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 tttccattgatggccgactaggccatcttttgatacctatgcagctagagtcaaggtatt 623
Query: 424 gttgcatttgcaaagtttgacaaagagtggcttggacctctacatcagaatcactgcaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gttgcatttgcaaagtttgacaaagagtggcttggacctctacatcagaatcactgcaag 683
Query: 484 tgaaatgtaaatgtctgtacgccagccaaggacagttgaatcagagtgtgaatcttcatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgaaatgtaaatgtctgtacgccagccaaggacagttgaatcagagtgtgaatcttcatt 743
Query: 544 ttagcatagtgctgtacacattagggtattaatagagtcactgccatagacgatgtagag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttagcatagtgctgtacacattagggtattaatagagtcactgccatagacgatgtagag 803
Query: 604 ctttgaaaaataaaagaggtctgatgtggggaggtactctgtgtggaacc 653
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 804 ctttgaaaaataaaagagatctgatgtggggaggtactctgtgtggaacc 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_l22.g1 MSMg01no321_l22.g1 CHROMAT_FILE:
MSMg01no321_l22.g1 PHD_FILE: MSMg01no321_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:33 2005
(300 letters)
>mm_chr1_32843111_32843810
Length = 700
Score = 542 bits (280), Expect = e-158
Identities = 295/300 (98%)
Strand = Plus / Minus
Query: 1 ttacgccaaggtcactgcattcgcacgctttccagcatgattgccaggtgattgctggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttacgccaaggtcactgcattcgcacgctttccagcatgattgccaggtgattgctggcc 441
Query: 61 tttcaaatacaggattcatgtataaggaattagacagaagagaaaggtaaggaatcaagt 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttcaaatacaggatccatgtataaggaattagacagaagagaaaggtaaggaatcaagt 381
Query: 121 acacacttgcaaaccactcttcagatatccttagctaattctgagttgaacttattaaag 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 acacacttgcaaaccactcttcagatatcctcagctaattctgagttgaacttattaaag 321
Query: 181 tcctattatttttagacaaccatgcctatcttaaaagaagcccaaaaggacattaaaagt 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 320 tcctattatttttagacaaccatgcctatcttaaaagaagcccaaagggacattaaaagt 261
Query: 241 caatcttcgccttcttgtcttgagtatgatgagagttacttaacatttgggaaagggaag 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 260 caatcttcgccttcttgtcttgagtatgatgagagttacttaaaatttgggaaagagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
