BAC Information

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BAC

Clone NameMSMg01-321M04
Chromosome1 (Build37)
Map Location 141,238,960 - 141,239,611
singlet/doubletsinglet
Overlap geneCrb1
Upstream geneLOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b
Downstream geneZbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321M04.T7 (MSMg01no321_m04.b1)MSMg01-321M04.TJ (MSMg01no321_m04.g1)
ACCAG440645AG440646
length832735
length of high quality
(start - end)
151 (75 - 225)652 (76 - 727)
definitionCHROMAT_FILE: MSMg01no321_m04.b1 PHD_FILE: MSMg01no321_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:34 2005CHROMAT_FILE: MSMg01no321_m04.g1 PHD_FILE: MSMg01no321_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGNGAGGGGCGCGCG
GAATTCCCAAGATTTCCACATAGAACTCAAGGTTAACAAACCAAAGGGCC
CAAGTGAAGATGCCTAATCCTACTCTGGGAGGAAGAAGAAAGAAGAAAGC
AGGAAATCACATGATGGGGGAGGGATGGAGGGACTTAGGTGGGAAAGGGA
ATAGGGAGCAGAAAAGGGGGACATACTCAGGTATTTGTGGGGGGAGAATA
GGATTGTTTTTTCGAATGCCTGTCCATCACGTGTTGCCGTGTTACCCCAG
GCCCCCGGGAAGAGCCGCGTTTTAGTAATTTTTCGCCGACAACACCAAAG
CCAAGCCACCAAATTTTAATAATTTTCCCCGGCGGCCCCCCCAGAANAAA
AAAAGAGAAAAGGAGAAGAGGGGGNCCCCCCCCCCAAAAAAAAAAAAAAA
AAAAACGCGGCGGGGGCGGGGCGGCCCACCTCAGCTATTTATTTGTGGCC
CGTATTCGCCGGCCCTGGCTTACCGCTGGCGCCCGTGGGTACTTTTTTTT
ACGCGCCTCTTCTTCTATTCCATCTTGTTTTGTACTCTATCCCGTAACCA
ACTATGCCACACTCTCCTTCCCCCATTTACCCCTATGCCTCTAGTTTTTG
TTCTGACCTCCTTACAACACACTTTATGACCATTATATATACGCCGCTAT
GTTTCGTTGTAACTACCTCCGCTGCCCTTGCCTTGTTGTTTATTCTCTGG
ACACTAACCAGTCTCGCGTTTCCTTTTTTGTCCCCTCTTGTCTATGTGGC
TGCCCCCGAGTCACCTCTTCTCCTTTATGTCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATTTAAGGCTTGCTATGAAATTC
TTACTTTGACCTCTTTTGGTAAAATGAAGCAGAACAAATCAGCAGAAGAA
AACCACTCACTTTGATCCACGGTGTGGCAGAATCCACATGGAATACTTGA
ACTAAGATGTAGATGGGTTCTTTGAAGACAGTCCCTTCCCCCTGAATTTA
TGCTGCATCCTAAAATGCTAGGCAGTCACTCTCATATATGCCGTTATCTC
TATACATGTTCATTGTCTCAAATACCAGCCTGAGACCAATATAATGTAAT
GGGAAGAGTACAGACATATGGATAGATGGATTGAAATATTGGTTCAACCA
ACGTCCATCTCTGTGACTCCAACGAAACTGGCCATCATCACAGTGCCCCA
GTTTCTTTATTTTTAATAGGGATAACTAATAGCCAAGTGCACAGCAGGTG
GCCAAATGGGTTTTGGATCGTAAACTTACATGTCGGCTCTGCTACTTACT
GACCTCTATGGGGCTTTTCATGAAAATACTAATATGCTTCAGGTTTCATT
TCTGTAAAAATGGCACTATTCCATAATATCAAACCCCTAACAGTGCTTGG
CATAAATGAGCATTATCTGTATCTTACTAATAGTAAAAATGTTATTAGTA
TTCTTGCTGTTTTTAATCCCAAAGAACAGAATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_m04.g1 MSMg01no321_m04.g1 CHROMAT_FILE:
MSMg01no321_m04.g1 PHD_FILE: MSMg01no321_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:34 2005
         (652 letters)



>mm_chr1_141238760_141239811
          Length = 1052

 Score = 1199 bits (620), Expect = 0.0
 Identities = 644/652 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttaaggcttgctatgaaattcttactttgacctcttttggtaaaatgaagcagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttaaggcttgctatgaaattcttactttgacctcttttggtaaaatgaagcagaac 260

                                                                       
Query: 61  aaatcagcagaagaaaaccactcactttgatccacggtgtggcagaatccacatggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcagcagaagaaaaccactcactttgatccacggtgtggcagaatccacatggaata 320

                                                                       
Query: 121 cttgaactaagatgtagatgggttctttgaagacagtcccttccccctgaatttatgctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 cttgaactaagatgtagatgggttctttgaagacagtcccttccccctgaatttctgctg 380

                                                                       
Query: 181 catcctaaaatgctaggcagtcactctcatatatgccgttatctctatacatgttcattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcctaaaatgctaggcagtcactctcatatatgccgttatctctatacatgttcattg 440

                                                                       
Query: 241 tctcaaataccagcctgagaccaatataatgtaatgggaagagtacagacatatggatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcaaataccagcctgagaccaatataatgtaatgggaagagtacagacatatggatag 500

                                                                       
Query: 301 atggattgaaatattggttcaaccaacgtccatctctgtgactccaacgaaactggccat 360
           |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct: 501 atggattgaaatattggttcaaccaacgtccatctctgtgactctaaggaaactggtcat 560

                                                                       
Query: 361 catcacagtgccccagtttctttatttttaatagggataactaatagccaagtgcacagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcacagtgccccagtttctttatttttaatagggataactaatagccaagtgcacagc 620

                                                                       
Query: 421 aggtggccaaatgggttttggatcgtaaacttacatgtcggctctgctacttactgacct 480
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 aggtggccaaatgggttttgaatcgtagacttacatgtcggctctgctacttactgacct 680

                                                                       
Query: 481 ctatggggcttttcatgaaaatactaatatgcttcaggtttcatttctgtaaaaatggca 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 ctatggggcttttcatgaaaatactaatatgcctcaggtttcatttctgtaaaaatggca 740

                                                                       
Query: 541 ctattccataatatcaaacccctaacagtgcttggcataaatgagcattatctgtatctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 ctattccataatatcaaacccctaacagtgcttggcataaatgagcattatttgtatctt 800

                                                               
Query: 601 actaatagtaaaaatgttattagtattcttgctgtttttaatcccaaagaac 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actaatagtaaaaatgttattagtattcttgctgtttttaatcccaaagaac 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)