CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAAACCTGCCTCAGGCCACTGAGACTTTGCTGGTAAATTTACTCA
CCATCAGTCCTAACAAAGGAGTTGAATCCTTAGGATTCACATGGTAGAAA
CATAGCATGGATGTCTGCAAGTGGTCCTCTGATCCCCACAATAAAATACA
TGTACACACACACACACACACACACACACAAACACACACACACACATACA
CACACAAACACACATACACACCAAAATCAAAACAAAAAACCACATAGGCC
CTCCTATTCTTTGAGTGACAGTTCTATGGAGTCAATTAGCAGTTGTCTGG
TCTCACTTTTTATAACTTTGTTTTCATAAGTTTTATTTTCTGCTTTAATC
TACTGAGGACGGCTCAGCTTGTATTTAAATATACAAAGTAAGAAATTCTA
TTAAAGGTTTCAGAATGTATGCCTTGACTGTTACTAAACTAAGATTGTAC
AAATCTCAAGTTTTGGAAAACGAGTATTAGACAAATGAATAAATATAGTA
CATACAAAGGAAAGTACGAATTCCAAGCATAAACTTGCCTAATCCATTAG
CAGCAACTGCTTCTGGGGAGAATGGATCAATAGACACTTATTGGAGAGAG
CCGTTGGGAATAAGAGGAAAATAATGAGTCTATTTCACATCTGACCTGTA
ACTCCCCAACATAAAATAAATAATTGA

TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGACCCATTT
TTTAATGCGGTTATTTGATTTTCTAGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATGTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTT
ACAGAAGCTTTGCAGTTACATGAGGTCACATTTGTCAATTCTTGATCTTA
CAGCACAAGCCATCGCTGTTCTATTCAGGAAATTTTCTCCTGTGCCCATA
TCTTCGAGGCTTTTCTCCTCTTTCTCCTCTATAAGTTTCACTGTCTCTGG
TTTTATGTGGAGTTCCTTGACCCACTTAGATTTGACCTTAGTACAAGGAG
ATAAGAATGTATCAATTTGCATTCTTCTACATGATAACCACCAGTTGTGC
CAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCAATGGATGGTTTTAGC
TCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATCTCTGGGT
CTTCAATTCTGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTT
ATAACAATTGCTCTGTTAGTACAACTTTAGGTCAGGCATGGTGATTCCAC
CAGAGGTTCTTTTATCCTTGAGAA

Query= MSMg01no322_a08.b1 MSMg01no322_a08.b1 CHROMAT_FILE:
MSMg01no322_a08.b1 PHD_FILE: MSMg01no322_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:53 2005
         (683 letters)



>mm_chr1_97566305_97567387
          Length = 1083

 Score = 1222 bits (632), Expect = 0.0
 Identities = 668/680 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcataaacctgcctcaggccactgagactttgctggtaaatttactcaccatcag 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcataaaccaggctcaggccactgagactttgctggtaaatttactcaccatcag 263

                                                                       
Query: 64  tcctaacaaaggagttgaatccttaggattcacatggtagaaacatagcatggatgtctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcctaacaaaggagttgaatccttaggattcacatggtagaaacatagcatggatgtctg 323

                                                                       
Query: 124 caagtggtcctctgatccccacaataaaatacatgtacacacacacacacacacacacac 183
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caagtggtcctctgatccacacaataaaatacatgtacacacacacacacacacacacac 383

                                                                       
Query: 184 acaaacacacacacacacatacacacacaaacacacatacacaccaaaatcaaaacaaaa 243
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 acaaacacacacacacacattcacacacaaacacacacacacaccaaaatcaaaacaaaa 443

                                                                       
Query: 244 aaccacataggccctcctattctttgagtgacagttctatggagtcaattagcagttgtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaccacataggccctcctattctttgagtgacagttctatggagtcaattagcagttgtc 503

                                                                       
Query: 304 tggtctcactttttataactttgttttcataagttttattttctgctttaatctactgag 363
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 tggtctcactttttataactttgttttcataatttttattttctgctttaatctactgag 563

                                                                       
Query: 364 gacggctcagcttgtatttaaatatacaaagtaagaaattctattaaaggtttcagaatg 423
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 gacggctcagtttgtatttaaatatacaaagtaagaaattctattaaaggtttcagactg 623

                                                                       
Query: 424 tatgccttgactgttactaaactaagattgtacaaatctcaagttttggaaaacgagtat 483
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 624 tatgctttgactgttactaaactaagattgtacaaatctcaatttttggaaaacgagtat 683

                                                                       
Query: 484 tagacaaatgaataaatatagtacatacaaaggaaagtacgaattccaagcataaacttg 543
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 684 tagacaaatgaataaatatagtacttacaaaggaaagtacgaattccaagcataaacttg 743

                                                                       
Query: 544 cctaatccattagcagcaactgcttctggggagaatggatcaatagacacttattggaga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctaatccattagcagcaactgcttctggggagaatggatcaatagacacttattggaga 803

                                                                       
Query: 604 gagccgttgggaataagaggaaaataatgagtctatttcacatctgacctgtaactcccc 663
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gagccgttgggaataaggggaaaataatgagtctatttcacatctgacctgtaactcccc 863

                               
Query: 664 aacataaaataaataattga 683
           ||||||||||||||||||||
Sbjct: 864 aacataaaataaataattga 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)