CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTCAATTACTTGTAAAAACCCTGTTCTATTAAATAAAATGATT
ATTCTACTTTACAGCTCAAATACAAGAGTTTAAAATGTAAATGCACTGTG
AAGGTAAAACTTAGGGGAAATTTTGCATTTGTTCCCATGCAATCATTATA
CGGATACAAACAATTAAGCATTTATCCTTTTCATTACTGTTTCTAGTAAT
GTAGGAAGAAGGCAAAAAAGCAAACAGTCCCGTGTAGTGCACATTTACTG
AGCTTATAACAGGTGCTAAATCAGTGGTTCGCCAGCTTGTATGTCTGTGA
CCTTTATTAAGAATTACAGTTCCTGCCCCAGCCTCTGTGTAAGTACCTAT
GTATGATGAGAAAATTGTTATATAATACAGCTTATTCTTGCTAAGTAAGA
CACACTGATGTTCTCTAGTCTAGTGTAGACTGTTACAATAGCTCCAGGAA
TGTTGGCTCTGACTCACTTACTTTTGCTGCCCACTGATAGCTTGTGCATT
GTGTTTTGAAATGTTGCACGGTGCTGCTCTTTCTCCTAAAACTGTGGTCT
GTGGGACAGCTTCCTCAGCACCGTGGGCTGTAAGAAATGAAGAACATGAA
GCTGCTCCTCACACCTACTGAATAAGAAAGACTCTGTATTTTAACAGCAC
CTCTAGATGCCCCTGTGCATTTCTGGTGCCAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTCTCAAGTGTTTAGTTCATCA
ACAACAAAACTAATCTATTAATTCCCCTCCCTTCTGACTTTATCTAGGCA
GAACCTTGCTCTCTTTCTCTCGAATACACACATATTTCAACGAGAGTGAA
AACCTGAAGGTTATGAAATGTTAACTTAAAAGTTATCTTGTTTGTTTGGA
AACCAAGGAAGAAATGTAGGAGCTACCCTCTATGTTAAGTCCAGGAACAC
TTAGCTCTGATATGGTTTAATGATGAATACAGAATTCTTTTTGTGTGAAG
AGTATTTATTATTGTTCTTACATCCATTCGCGCCTAAAACTTATCATTAA
AGAGTTATTGCATAATATCAATTAATCCGTTCAAATATATATCAGTCGCT
CATTAAACATAGTGAAGACCTGCTGTATGTCAGCTGCTATCATGGTTCAC
AGCACTATGTTAACAAAGAACTAATTATATATTCTCTCCAGGGAATTAGG
AATGGGTGAGTTTTCCAGGGAAGCAATTGTCAGGATGTACTCAGCAGTGA
AAGAACTGATTGGAGTGGCAGTGTTTGTTAAATTATCTCCCATTCTGCAT
AGTTCCTGATGCATAGAAAATAGTTGGTGTATATCTGAGTGATTATTACC
ATTACTGATCCACCCCTTTATCAGTTCTATAGA

Query= MSMg01no322_d20.b1 MSMg01no322_d20.b1 CHROMAT_FILE:
MSMg01no322_d20.b1 PHD_FILE: MSMg01no322_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:09 2005
         (684 letters)



>mm_chr1_51125144_51126227
          Length = 1084

 Score = 1276 bits (660), Expect = 0.0
 Identities = 675/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttcaattacttgtaaaaaccctgttctattaaataaaatgattattctactt 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttcaaccacttgtaaaaaccctgttctattaaataaaatgattattctactt 264

                                                                       
Query: 65  tacagctcaaatacaagagtttaaaatgtaaatgcactgtgaaggtaaaacttaggggaa 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacagctcaaatagaagagtttaaaatgtaaatgcactgtgaaggtaaaacttaggggaa 324

                                                                       
Query: 125 attttgcatttgttcccatgcaatcattatacggatacaaacaattaagcatttatcctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attttgcatttgttcccatgcaatcattatacggatacaaacaattaagcatttatcctt 384

                                                                       
Query: 185 ttcattactgtttctagtaatgtaggaagaaggcaaaaaagcaaacagtcccgtgtagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcattactgtttctagtaatgtaggaagaaggcaaaaaagcaaacagtcccgtgtagtg 444

                                                                       
Query: 245 cacatttactgagcttataacaggtgctaaatcagtggttcgccagcttgtatgtctgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacatttactgagcttataacaggtgctaaatcagtggttcgccagcttgtatgtctgtg 504

                                                                       
Query: 305 acctttattaagaattacagttcctgccccagcctctgtgtaagtacctatgtatgatga 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 acctttattaagaattacagttcctgtcccagcctctgtgtaagtacctatgtatgatga 564

                                                                       
Query: 365 gaaaattgttatataatacagcttattcttgctaagtaagacacactgatgttctctagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaaattgttatataatacagcttattcttgctaagtaagacacactgatgttctctagt 624

                                                                       
Query: 425 ctagtgtagactgttacaatagctccaggaatgttggctctgactcacttacttttgctg 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 ctagtgtagactgttacaatagctccaggaatattggctctgactcacttacttttgctg 684

                                                                       
Query: 485 cccactgatagcttgtgcattgtgttttgaaatgttgcacggtgctgctctttctcctaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cccactgatagcttgtgcattgtgttttgaaatgttgcacggtgctgctctttctcctaa 744

                                                                       
Query: 545 aactgtggtctgtgggacagcttcctcagcaccgtgggctgtaagaaatgaagaacatga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aactgtggtctgtgggacagcttcctcagcaccgtgggctgtaagaaatgaagaacatga 804

                                                                       
Query: 605 agctgctcctcacacctactgaataagaaagactctgtattttaacagcacctctagatg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agctgctcctcacacctactgaataagaaagactctgtattttaacagcacctctagatg 864

                               
Query: 665 cccctgtgcatttctggtgc 684
           ||||||||||||||||||||
Sbjct: 865 cccctgtgcatttctggtgc 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no322_d20.g1 MSMg01no322_d20.g1 CHROMAT_FILE:
MSMg01no322_d20.g1 PHD_FILE: MSMg01no322_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:10 2005
         (351 letters)



>mm_chr1_51293267_51294017
          Length = 751

 Score =  679 bits (351), Expect = 0.0
 Identities = 351/351 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaaaacttatcattaaagagttattgcataatatcaattaatccgttcaaatatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cctaaaacttatcattaaagagttattgcataatatcaattaatccgttcaaatatatat 492

                                                                       
Query: 61  cagtcgctcattaaacatagtgaagacctgctgtatgtcagctgctatcatggttcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagtcgctcattaaacatagtgaagacctgctgtatgtcagctgctatcatggttcacag 432

                                                                       
Query: 121 cactatgttaacaaagaactaattatatattctctccagggaattaggaatgggtgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cactatgttaacaaagaactaattatatattctctccagggaattaggaatgggtgagtt 372

                                                                       
Query: 181 ttccagggaagcaattgtcaggatgtactcagcagtgaaagaactgattggagtggcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttccagggaagcaattgtcaggatgtactcagcagtgaaagaactgattggagtggcagt 312

                                                                       
Query: 241 gtttgttaaattatctcccattctgcatagttcctgatgcatagaaaatagttggtgtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtttgttaaattatctcccattctgcatagttcctgatgcatagaaaatagttggtgtat 252

                                                              
Query: 301 atctgagtgattattaccattactgatccacccctttatcagttctataga 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atctgagtgattattaccattactgatccacccctttatcagttctataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)