Query= MSMg01no322_k24.b1 MSMg01no322_k24.b1 CHROMAT_FILE:
MSMg01no322_k24.b1 PHD_FILE: MSMg01no322_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:42 2005
(318 letters)
>mm_chr1_87887259_87887976
Length = 718
Score = 513 bits (265), Expect = e-150
Identities = 299/319 (93%), Gaps = 18/319 (5%)
Strand = Plus / Minus
Query: 2 gaattctacatggttt-ttcaaaa--aaactgtctccctgctgttccagttttcagagac 58
|||||||||||||||| || || | ||||||||||||||||||| ||||||||||||
Sbjct: 550 gaattctacatggtttctt---aaggagactgtctccctgctgttccggttttcagagac 494
Query: 59 tttttatttatttatttattcatttatttatttatttatttatttattcatttgcttctg 118
||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 493 tttttatttattt--------atttatttatttatttatttattt----atttgcttctg 446
Query: 119 tctggcacaaattatatggatacaggcatgcagtagaaaagtaagaaatactaaaaaatt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctggcacaaattatatggatacaggcatgcagtagaaaagtaagaaatactaaaaaatt 386
Query: 179 tcaaagggccagatttttatacggtctgtagaggagtgattgtctggtctgtaattttga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaagggccagatttttatacggtctgtagaggagtgattgtctggtctgtaattttga 326
Query: 239 ctttcctcctagcatttttgttttctttttcttcttgtttttgttcttgttattttgtaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttcctcctagcatttttgttttctttttcttcttgtttttgttcttgttattttgtaa 266
Query: 299 ttagggtctcaatatgcta 317
|||||||||||||||||||
Sbjct: 265 ttagggtctcaatatgcta 247
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_k24.g1 MSMg01no322_k24.g1 CHROMAT_FILE:
MSMg01no322_k24.g1 PHD_FILE: MSMg01no322_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:42 2005
(292 letters)
>mm_chr1_87721589_87722280
Length = 692
Score = 559 bits (289), Expect = e-164
Identities = 292/293 (99%), Gaps = 1/293 (0%)
Strand = Plus / Plus
Query: 1 cagttagctatgccaagccataataaaagtgtactccttcgtttgcagcctcctagagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttagctatgccaagccataataaaagtgtactccttcgtttgcagcctcctagagtt 260
Query: 61 tttacttgtgttccatggtgcatagttattgtactgaggttgtgtagtaggatacataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacttgtgttccatggtgcatagttattgtactgaggttgtgtagtaggatacataca 320
Query: 121 cataggtcaatccctttttaactttgccacagccttttatttattatttttttattttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataggtcaatccctttttaactttgccacagccttttatttattatttttttattttta 380
Query: 181 tttatttattcattttacaaaacccctttctttatacaaaaaaaa-gaaaaaagaaaaaa 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tttatttattcattttacaaaacccctttctttatacaaaaaaaaagaaaaaagaaaaaa 440
Query: 240 aagaaaaggcttattattcttattttaggtaagtggcagacaggactagggtg 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaaaggcttattattcttattttaggtaagtggcagacaggactagggtg 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
