BAC Information

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BAC

Clone NameMSMg01-322L21
Chromosome1 (Build37)
Map Location 133,102,082 - 133,296,544
singlet/doubletdoublet
Overlap geneRassf5, Ikbke, Srgap2, LOC100042826
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn
Downstream geneLOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322L21.T7 (MSMg01no322_l21.b1)MSMg01-322L21.TJ (MSMg01no322_l21.g1)
ACCAG441353AG441354
length711732
length of high quality
(start - end)
247 (71 - 317)204 (425 - 628)
definitionCHROMAT_FILE: MSMg01no322_l21.b1 PHD_FILE: MSMg01no322_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:46 2005CHROMAT_FILE: MSMg01no322_l21.g1 PHD_FILE: MSMg01no322_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,102,082 - 133,102,328)(133,296,341 - 133,296,544)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGGGTTACAGACGAACCATTCCTTCTCTAGGAAACGAGTCAGG
ACAGAAACATAGGCTAAATTGCAATCATGAGAACCAAGAAAGCAAACGCT
GAAGAGACCGGGTGGGAATCTGATGCAGTCTGTTCCCTCGCTTCCCAAGT
CTGCCAGGAGAGACTGGGCTGGATCTCTGCATTTTCCACATTCAAGCTAA
TGTTCACAAGCTATAGGTGGCAGATCACCTCCACTTTATGGTGGACAGAG
GATGGCAGTAGTAACTGTCCTTTGGAAACAGAAACAACAACAACAACACC
TCCAAAAAGACCAAAGTAGTACGCTGTACAACAAATGCAAAGAGCCAAAC
GATAATATATGTAAGTGCACTCCTCCAGAGGAAAGCAGTCAGAGGGTGGA
AAAACCTGAAGAAATGCCTACAAATTCCCCAATTTTGAGGACAACATAAA
TCCACACAGTCAACAAAGCGAATGAACCCCAAGCAAAAGAAACATCCACC
AGCAAAGCACATGATACTCAACTAGTCAAAAGCCACAGAAAAGAGCAGGC
CAGGTGGTGGCGCACACGTTTAATTCCAGCACTCAGGAGGCAGAAGCAGG
AGGATCTTTGAGTTCAAGGTCAGCCTGGTCTAATTCCAGATCAGCCAGGG
TTATACAGAGA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTTCATAGTTTCTGACCCCTTAGT
TATCCAGGCAGTTACTGTTAAATCCCAGGGACAAGAATAGTGATGTTTTC
TGGTATTTTGTTTTTGTTTTTAATTTCATTTTTAATAGACAAACCCCTGG
ACCTTAGTTGCATTTGATTTTATTTTGTGTTGTATAAGTAGTACATACAA
CTGGAGTCACATGTGTAATCTCAGTCCTTAGGAGGATGAGCACAGGAAGG
TTGCTACAAGTTCGGGGGCTTTTTATGCTACAGAGTGAGTTAAGGCCAGG
CTGAGTTGCATATTATGACACTCCCACCACCAACAAATAAGAAGTCATAA
TTATTTTGGAATCATTACGCCCCATTTAATATATCTTTTCAAAAATTTCT
GTATATTTTGTAGAAAATGATGATTATATGATGTCCACGTTGTATAATTT
TCATATTTTTCATTTCTCTTTAATAAACATATTTTTCCATGTCATTGCAT
CTTTTTATAAAAACATCACTTTCTATAACTGTGCAGCATTCTTTCTGTCT
TCCTTGGTGTCCTCATGTTCTTTTGGTTCTTAGGTCTCTGTTGACTCGAT
TCTCCATTTGGATAGTCCTATATATGTAGTCCCATATATATGCATAAGCA
ATCTAAATTCTGTTTGACTTCCCCAAGGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_l21.b1 MSMg01no322_l21.b1 CHROMAT_FILE:
MSMg01no322_l21.b1 PHD_FILE: MSMg01no322_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:46 2005
         (247 letters)



>mm_chr1_133101882_133102528
          Length = 647

 Score =  424 bits (219), Expect = e-123
 Identities = 240/247 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccattccttctctaggaaacgagtcaggacagaaacataggctaaattgcaatcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aaccattccttctctaggaaacgagtcaggacagaaacataggctaaattgtaatcatga 260

                                                                       
Query: 61  gaaccaagaaagcaaacgctgaagagaccgggtgggaatctgatgcagtctgttccctcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaccaagaaagcaaacgctgaagagaccgggtgggaatctgatgcagtctgttccctcg 320

                                                                       
Query: 121 cttcccaagtctgccaggagagactgggctggatctctgcattttccacattcaagctaa 180
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct: 321 cttcccaagtctgccaggagagactgggctggatctctgccttttccacattcatgcgaa 380

                                                                       
Query: 181 tgttcacaagctataggtggcagatcacctccactttatggtggacagaggatggcagta 240
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 381 tgttcacaagctagaggtggcagatcacctccactttatggtggacagaggatggtggta 440

                  
Query: 241 gtaactg 247
           |||||||
Sbjct: 441 gtaactg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no322_l21.g1 MSMg01no322_l21.g1 CHROMAT_FILE:
MSMg01no322_l21.g1 PHD_FILE: MSMg01no322_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:46 2005
         (204 letters)



>mm_chr1_133296141_133296744
          Length = 604

 Score =  379 bits (196), Expect = e-110
 Identities = 202/204 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaatatatcttttcaaaaatttctgtatattttgtagaaaatgatgattatatgatgt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tttaatatatcttttcaaaattttctgtatattttgtagaaaatgatgattatatgatgt 345

                                                                       
Query: 61  ccacgttgtataattttcatatttttcatttctctttaataaacatatttttccatgtca 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ccacgttgtataattttcaaatttttcatttctctttaataaacatatttttccatgtca 285

                                                                       
Query: 121 ttgcatctttttataaaaacatcactttctataactgtgcagcattctttctgtcttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttgcatctttttataaaaacatcactttctataactgtgcagcattctttctgtcttcct 225

                                   
Query: 181 tggtgtcctcatgttcttttggtt 204
           ||||||||||||||||||||||||
Sbjct: 224 tggtgtcctcatgttcttttggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)