BAC Information

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BAC

Clone NameMSMg01-323M04
Chromosome1 (Build37)
Map Location 116,898,161 - 116,898,860
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323M04.T7 (MSMg01no323_m04.b1)MSMg01-323M04.TJ (MSMg01no323_m04.g1)
ACCAG442092AG442093
length1,1341,258
length of high quality
(start - end)
660 (89 - 748)700 (135 - 834)
definitionCHROMAT_FILE: MSMg01no323_m04.b1 PHD_FILE: MSMg01no323_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:41 2005CHROMAT_FILE: MSMg01no323_m04.g1 PHD_FILE: MSMg01no323_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGCTCTNNNNNNNGTCATTGGGCGCTAAGACTCCTATAGGGAGAGGATC
CGCGGAATTCCTGATCTTTCCGAACTTATATAATGACTGGGTGTTGGATC
TTGTCAAATGCTTTCTCTGCATCTAACGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAA
ACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATT
GCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTT
TGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTG
GATCTTTCTGTGGTTTTGGTATCAGAGTAATAGTGGCTTCATAAAATGAG
TTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAAC
TGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCAT
CTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAAATGCTTCTATT
TCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAA
CTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTT
CCAGTTTTTTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGG
ATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCAGTTCTGATTTTGTT
AATTAAGATTTTGTCCCTGTGCCCTCTATTGAGTCTAGCTAANGGTTTAT
CTATCTTGTTGATTTTCTCAAAGAACCAACTCCTCGTTTTGTTAATTCTT
TGAATAGTTCTTCTTGTTTCCACTTGGTTGAATTCCCCCCTGAGTTTGAT
TATTTCCCTGGCGTCTACTCCTCTTGGGGGAATTTGGCTTCCTTTTTTTC
TATAGTTTTTAAAAGGGCTGGCCAAACTTGCTAAAATGGGGTTCTTTTCC
CGTTTTTTTTTTGGAGGGCCCCCAAAACTATTAAATTTCCCCCTCTTATA
AAAAGGTTTTTCTTTTGTTTCCCAAAAAATTGTGAGTAACCTTTGGGGTT
TCTTTTTTTTTTAAATTTTCTCAAAAGATTATTA
NCCAGCTANNNNNNATTGAAGCGTAGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATAGCCCCCAGAAATGAG
GAAGAGTTCTTATTTCCACTCTTCCACACCACCATATGTTGTTATTTTTT
ATCTTTAGGGCAGTCTTTTTGACTCAGGTATGTGGAAACTTTTGATTTTG
CTGATGGCTAAGCCATGATGGCTACCATTGGAAGGATCAGAGAGGCCCAT
ATGGGCCCAGTGGGTGATGTAGAATCCTACTACATATGCTGCACCACACA
GTCATGGTACTTGCTTCACATTATGTATGGAATGCCAAAAGTTTGTACCT
CTGTTCTTGCTAACTGACATTTAGCACTGCTTGCAGTAGAAAGTAGGTAC
ACAATGGCTTTATAATTGTTGTACTTGAAGTGCATTGGTTATTCTTATTC
AAAGACACAGAATAGACAAATCCCCAGGAAGAGTCTTGTGAGTTATGAAC
AGTTACAAACACAATCTATCATTCTCAGTCCTAGCAAATTTCCCATCAAA
AAATCAGCACAGATCAATGATAAAAGTAAGTCATTGTTTTTGAAAACTAA
GGGTCAGCAGAGTATAGAAACTCCAATTTTACTCAAAGCTGATGATTATA
AGTTGATTGACAGGCCCAGAGAGTGACAGAAAAAATACAGCAGAATTCAT
CAGTCAGAGTCACCCTGTGCAGACATCCGAAGGTATTTCATTTGAGATGA
AGGGAGTGATTTAGTGCCAAATTTTTTTCATCTCTTTCATATTTGAAAAT
GCCAGTTCACTATAACAGCACCTCATGGACATGCTTACTTCTTAATAATG
AAATTTAGATTGCTCTGATCAGGCACTCAGCATTTTGTTGAAAGGTTATT
GTCTCTTATCTTCTGGAATAGAGTTCCATAGTATCTCCATGCACTATATC
TTCCTCATTCAAGTGCACAAGGAAAACCAAATGTATATATGGTTTCCCAT
TTTAAAACAGCAATTCCTTGAATCCGAAATTTAATTCCCCTGGGGAAATA
AATTAATTTAAACTCTAATAAAGGCCCTCCCCTAAACCTTTTTTTTATTG
TGAAAAAATTCCCCCCCGCATATTTTTTTTAATAGGAAACCCCCTTTTTT
TTTTGTGGGAATTGGGGAAAACCTTCTAAACTTTTTTTTTGGGGGGGAAC
AACAACGAGGGGGGGAATGTTAAGGGGCCCCCATCTTGGTGTTTGTTGGA
AAACAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_m04.g1 MSMg01no323_m04.g1 CHROMAT_FILE:
MSMg01no323_m04.g1 PHD_FILE: MSMg01no323_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:41 2005
         (700 letters)



>mm_chr1_116897961_116899060
          Length = 1100

 Score = 1338 bits (692), Expect = 0.0
 Identities = 698/700 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgttgttattttttatctttagggcagtctttttgactcaggtatgtggaaacttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tatgttgttattttttatctttagggcagtctttttgactcaggtatgtggaaacttttg 841

                                                                       
Query: 61  attttgctgatggctaagccatgatggctaccattggaaggatcagagaggcccatatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 attttgctgatggctaagccatgatggctaccattggaaggatcagagaggcccatatgg 781

                                                                       
Query: 121 gcccagtgggtgatgtagaatcctactacatatgctgcaccacacagtcatggtacttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gcccagtgggtgatgtagaatcctactacatatgctgcaccacacagtcatggtacttgc 721

                                                                       
Query: 181 ttcacattatgtatggaatgccaaaagtttgtacctctgttcttgctaactgacatttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttcacattatgtatggaatgccaaaagtttgtacctctgttcttgctaactgacatttag 661

                                                                       
Query: 241 cactgcttgcagtagaaagtaggtacacaatggctttataattgttgtacttgaagtgca 300
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 660 cactgcttgcagtagaaagtaggtacacaatggcaatataattgttgtacttgaagtgca 601

                                                                       
Query: 301 ttggttattcttattcaaagacacagaatagacaaatccccaggaagagtcttgtgagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttggttattcttattcaaagacacagaatagacaaatccccaggaagagtcttgtgagtt 541

                                                                       
Query: 361 atgaacagttacaaacacaatctatcattctcagtcctagcaaatttcccatcaaaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atgaacagttacaaacacaatctatcattctcagtcctagcaaatttcccatcaaaaaat 481

                                                                       
Query: 421 cagcacagatcaatgataaaagtaagtcattgtttttgaaaactaagggtcagcagagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cagcacagatcaatgataaaagtaagtcattgtttttgaaaactaagggtcagcagagta 421

                                                                       
Query: 481 tagaaactccaattttactcaaagctgatgattataagttgattgacaggcccagagagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tagaaactccaattttactcaaagctgatgattataagttgattgacaggcccagagagt 361

                                                                       
Query: 541 gacagaaaaaatacagcagaattcatcagtcagagtcaccctgtgcagacatccgaaggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gacagaaaaaatacagcagaattcatcagtcagagtcaccctgtgcagacatccgaaggt 301

                                                                       
Query: 601 atttcatttgagatgaagggagtgatttagtgccaaatttttttcatctctttcatattt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atttcatttgagatgaagggagtgatttagtgccaaatttttttcatctctttcatattt 241

                                                   
Query: 661 gaaaatgccagttcactataacagcacctcatggacatgc 700
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaaaatgccagttcactataacagcacctcatggacatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)