BAC Information

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BAC

Clone NameMSMg01-324B05
Chromosome1 (Build37)
Map Location 173,331,740 - 173,332,294
singlet/doubletsinglet
Overlap geneArhgap30
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4
Downstream geneUsf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324B05.T7 (MSMg01no324_b05.b1)MSMg01-324B05.TJ (MSMg01no324_b05.g1)
ACCAG442322AG442323
length784783
length of high quality
(start - end)
548 (78 - 625)555 (76 - 630)
definitionCHROMAT_FILE: MSMg01no324_b05.b1 PHD_FILE: MSMg01no324_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:18 2005CHROMAT_FILE: MSMg01no324_b05.g1 PHD_FILE: MSMg01no324_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTGGATCCGCGG
AATTCTAAGCCAGCTTCACACCTTGATTCTGTCTCAAAACAAAACAAATC
AAACACCACCACTACAAAATCCTCAAACTGGGCACAAGAGCTCATGTCTG
TTATTGTAGCACTTGAGAGTCTAAGGCAGGAGGATGACCGTGAATCCAAG
GATAGCTCTCAAAGGGTTCCAGGCTAATTTGGGTTATGGAGCAAAACTGT
CTTAAACAAACAAATGAAACAAAACAAAGCTTCACCAGGAGTTGGGTGTG
GAGATTCAGACCTGTGATTCTCACACCTGTAGGGCTAAGGCAGGAGATAG
TAAGTTTGACGCCAGCCTTGGCTACATAGGGAGTTCTAGACACCATAGGG
CTGTATAGCAAAGTCCTATCTCAAAAGAGCCAGGTGCTGGAGAAATGGTC
CGGCATCTAAGAACATGTACTGCTCTTGCAGAGGACCCAGGATTGGCTCC
CTAAACCAACAGCAGGAAGTTAATTGGTTGTCACTTATAACTCTAGCTCC
AAGGGATCTGATGTCCCCTTTTAATCTCTGCAGGCACCTGCTCTCATGTG
GCATACATATATAAATAGACACACCAGTAAGTTAAAAATAAACACTAGTC
GGGCAGTGGTGGCACATGCCTTTTATTCCAGCACTTGGGAGACAGAGGCA
GGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGAGAGTTCCAAG
AACAGCCCAGGGTTACACAGAAAAACCCCTGCCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGCCGAATTCCAGGGTCCTGCAAGAAGGAAGAAAG
AGATCGTCTAAAATATAAAATGGTTGGGCTGAGACTTGAAAGTTGGGAGG
GACAAGCAAGGCTGGGCCCTTAGGGCACAGGAGGAGGGGACAGAGATGGC
TCTGCAGTACAGGGGGTGGAGCCTCACACACCTGTAGTTTTGGATAGGGA
GTTCTTGAAGCACTTCTAGGATCTTGACCAATCGCTCTGGCTCTAGCTGC
ACGGCCACTGCCTCCTATTGGGAACAGATGCATAAGTAGGAGACATTGAC
TCAGATTTGACCCCATGTGCTTCTCAGAGCTCCAAATTAAACTCTTGGGA
ATCATCTGTGCTATGTTCCACAACGGCCCCACCGAAATCTTCAAGGCACC
ATAAAATAGTAAAGTTAAAAACACCTCCAGCTGAGTATGGTAGCACACGC
CTACGACCCCAGCACTCTCGAGGTAGATGCAAAAGCAAGAAAACAAGGGC
AAGGATTTAGCCCCATGGGAGAGGGCTTGCTTTGCATGCCCAAGACCACA
GGTTTGATTCCTAGAGCCACAGGAAGAAAGCCTAGGACCTTCTGAACAAC
AAATGACTGCTGGATCTCACGCATACCCTTAATAGCCTGTCTCGTGACCT
TGAACCACTCACTAACCTTCCCTTGGCTGCTTTGGGACAGCTCCCGGAAC
CAAACTGCAAAAATGTTTTTAAGGTGTCTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_b05.g1 MSMg01no324_b05.g1 CHROMAT_FILE:
MSMg01no324_b05.g1 PHD_FILE: MSMg01no324_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:18 2005
         (555 letters)



>mm_chr1_173331692_173332646
          Length = 955

 Score = 1058 bits (547), Expect = 0.0
 Identities = 553/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggtcctgcaagaaggaagaaagagatcgtctaaaatataaaatggttgggctgagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cagggtcctgcaagaaggaagaaagagatcgtctaaaatataaaatggttgggctgagac 544

                                                                       
Query: 61  ttgaaagttgggagggacaagcaaggctgggcccttagggcacaggaggaggggacagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttgaaagttgggagggacaagcaaggctgggcccttagggcacaggaggaggggacagag 484

                                                                       
Query: 121 atggctctgcagtacagggggtggagcctcacacacctgtagttttggatagggagttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atggctctgcagtacagggggtggagcctcacacacctgtagttttggatagggagttct 424

                                                                       
Query: 181 tgaagcacttctaggatcttgaccaatcgctctggctctagctgcacggccactgcctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgaagcacttctaggatcttgaccaatcgctctggctctagctgcacggccactgcctcc 364

                                                                       
Query: 241 tattgggaacagatgcataagtaggagacattgactcagatttgaccccatgtgcttctc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tattgggaacagaggcataagtaggagacattgactcagatttgaccccatgtgcttctc 304

                                                                       
Query: 301 agagctccaaattaaactcttgggaatcatctgtgctatgttccacaacggccccaccga 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 303 agagctccaaattaaactcttgggaatcatctgtgctatgttccacaatggccccaccga 244

                                                                       
Query: 361 aatcttcaaggcaccataaaatagtaaagttaaaaacacctccagctgagtatggtagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aatcttcaaggcaccataaaatagtaaagttaaaaacacctccagctgagtatggtagca 184

                                                                       
Query: 421 cacgcctacgaccccagcactctcgaggtagatgcaaaagcaagaaaacaagggcaagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cacgcctacgaccccagcactctcgaggtagatgcaaaagcaagaaaacaagggcaagga 124

                                                                       
Query: 481 tttagccccatgggagagggcttgctttgcatgcccaagaccacaggtttgattcctaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tttagccccatgggagagggcttgctttgcatgcccaagaccacaggtttgattcctaga 64

                          
Query: 541 gccacaggaagaaag 555
           |||||||||||||||
Sbjct: 63  gccacaggaagaaag 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)