Query= MSMg01no324_d14.b1 MSMg01no324_d14.b1 CHROMAT_FILE:
MSMg01no324_d14.b1 PHD_FILE: MSMg01no324_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:29 2005
(411 letters)
>mm_chr1_169342020_169342831
Length = 812
Score = 716 bits (370), Expect = 0.0
Identities = 400/414 (96%), Gaps = 9/414 (2%)
Strand = Plus / Plus
Query: 3 ggaattcaagggcaacta----tacccctttcagcacacatctttcacagcattaaccgc 58
|||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaagggcaactagaaat----ctttcagcacacatctttcacagcattaaccgc 258
Query: 59 aatcctccctgacaacttggaggttactgactctgaaacgaagccagttgctgagagtcc 118
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 259 aatcctccctgacaacttggaggttactgactctgaaacgaagccagttgccgagaatcc 318
Query: 119 agcatgtattctttccgtgacccttagaaactggcctgtttcctattaatgatttttttt 178
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agcatgtattctttctgtgacccttagaaactggcctgtttcctattaatgatttttttt 378
Query: 179 gttgttgttggaggcatgttatagtctattttttttttctggttaattcccagatcttct 238
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 379 gttgttgttggaggcatgttatagtctagtttttttttctggttaattcccagatcttct 438
Query: 239 gccatttttcttgtacaaccc-gttttctttgtggtgggtcttaccgaaagacaccacgg 297
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gccatttttcttgtacaaccccgttttctttgtggtgggtcttaccgaaagacaccacgg 498
Query: 298 gcagaaagacagcttctggaaattatcatgtttcagcaacagaactgtttaaacatctga 357
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcagaaagagagcttctggaaattatcatgtttcagcaacagaactgtttaaacatctga 558
Query: 358 cagccatttgcaaccaaacatctctggtctcatccatggaaaatatcacacata 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagccatttgcaaccaaacatctctggtctcatccatggaaaatatcacacata 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space: 322806
Effective search space used: 322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_d14.g1 MSMg01no324_d14.g1 CHROMAT_FILE:
MSMg01no324_d14.g1 PHD_FILE: MSMg01no324_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:29 2005
(553 letters)
>mm_chr1_169505965_169506917
Length = 953
Score = 704 bits (364), Expect = 0.0
Identities = 491/558 (87%), Gaps = 47/558 (8%)
Strand = Plus / Minus
Query: 1 ctcagttatagagtagaagtagaaaatactgtctaaaatggaaatttatttttcaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ctcagttatagagtagaagtagaaaatactgtctaaaatggaaatttatttttcaaaaaa 771
Query: 61 atgagcatccttcaaaaacacaaaacgagtggtttaaaatcggatggcttgggggctgag 120
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 770 atgagcatccttcaaaaacacaaaatgagtggtttaaaataggatggcttgggggctgag 711
Query: 121 gcgtgtagctcagtggtgggacaaatgttttatgtggataagcacggaagaaacaaaagg 180
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 710 gcgtgtagctcagtggtggaacaaatgttttatgtggataagcatggaagaaacaaaagg 651
Query: 181 cagaacgagacgggagctgcaaatgagtcacattcctcctttcctatagaggaaaaaa-t 239
|||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |
Sbjct: 650 cagaacgagacgggagctgcaaatgagtcagatccctcctctcctatagaggaaaaaaat 591
Query: 240 gtcagtcaacacaatctgaaatagaaaaactaaggaaaaggcagatcggcaattgggtgg 299
|||| |||||||||||||||||||
Sbjct: 590 gtca-------------------------------------cagatcggcaattgggtgg 568
Query: 300 cttgaagatagtcaccagaagagccaagaacaggcttgtggggccaggtgagagtgtaga 359
||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct: 567 cttgaagatagtcaccagaagcgccaagaacaggcttgtggggccaggtgagggcgtaga 508
Query: 360 gggggccccttcagggtttgtttgtttgtt-tttgcttctttttc-tttctttctttttt 417
||||||||||||||||||||||||||| || ||| ||| |||||| ||| ||| ||||||
Sbjct: 507 gggggccccttcagggtttgtttgttt-ttgttt-ctt-tttttcattttttt-tttttt 452
Query: 418 taacagtgccatgtatcc--gactcgttttaatctggctatacagccccaaggataactt 475
|| ||||||| ||||||| |||||| | |||||||||||||||| |||||||||||||
Sbjct: 451 ta-cagtgccgtgtatccaagactcgcgtcaatctggctatacagctccaaggataactt 393
Query: 476 tgtctttctgattcctctgcctcacctcccaggtgctgggatgacagacgtatgccaccg 535
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 392 tgtctttctgattcctctgcctcacctcccaggtgctgggatgacagacgtgtgcaacca 333
Query: 536 tgcctggtttatgtggtg 553
||||||| ||||||||||
Sbjct: 332 tgcctggcttatgtggtg 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
