TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGCGG
AATTCTCCCACCAATATATGCGTGAGTTTCAATTTGGGATTTAAGCTTTA
GCAATTTTTTTTTTTTACAAATTTGGATGCCTTTATGTTTGGTGCATAGA
TGTTCAGAATTGAGATATATCTTGGTAGATTTCTCTTTGATGAGTATGAT
GTGTCCTTCCCTGTCTCCTTTGATTACTTTTGGTTGAAAGTCTATATTAG
ATATTAGACTGGCTACTCCATCTTGCTTCTTGGAACCATTTACTTGGAAA
ATTTTTTCCAGTCCTTTACTCTGAGGTAATATCTACCTTTATTGCTGAGG
TCTGTTTCTTATATGCAACACAATGATGGATCCTATTTTCACAGTAATTC
TGTTAGCCTGTATCCTTGTTTGTTTGCTCTTAATTATTTATTTTTTATGC
TTCATTTTTTTATTTCCACCCCTGTCCACACTCCGACTGTTCTACATCAC
ATACCTCTTCCACAAACCCCTATCTCCACTTGGTTTCCCACAACCCCCAC
CCCACCTGACCTCTATACACCCTGTGTCCACTAGTGTCTTGAGGATTATA
TGCATCATTTCTGATAGAACATAGACCTTGTTGTCATCTACTATTATGTG
TGTTCTGGGCCTCATACCAGTTATTATATGTGTCCTGTTTGGTGGCCCTG
TGTTTTTTACATCTCCGCGTTTCCTTATTAATTGAAATTCGTTGGTCCTC
CTTACTGATT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAACATCACACAATTGCAGAAACT
ATCTGCAGCTGGCACAATCACACCCCTGCTAGAGCACGATGAAAATTATA
GTCAGCTGCTGTGGACAATGTGAAACAGCCCCATATCCCCAAACCTGGTA
TTAAAATGAAAGTGTATCCTTATATTCCTTTTTTTTTAAAGAATTCAGAA
TTCTTAATACACCTAATTTTAAGTCACACATAATACAGAAATGATACACG
TCATGATTTGCTATGGGATGTTTTAACTATGAAAGTATTAAGGCAAAAAC
ATACAAAGTTATCTTGTTAATGGTTGAAACTTGAAAAATATTTTTAAGTG
AAACTAGAATTAAATCACTTTCCTCCTGCTTACTACAATTTTACATGTGA
TAATTTTTCTTTATCCTAGCTAGCTCCCAAGTAAAGTAAGTAAGTATAAG
TAAGTAAGATTTACCTAAGCTTTACAACACAGTAGCTGAGCAGTATTAAT
CTATTTTAATTCTCTAAGCTAATCTGGCTACCTCCCAACCAAAATTCCAG
AGATACTTGCATTTTAGTATTCATCTGGCTCTCTCTGCTCCAGGTCTGTT
CCACGGTGACTCCTTGACCCTCTCCTCTTGGTGAATCCTCTCTTTCTCCC
TCTTCCTCCCCCTCCCCTGGCTGGGGTCAGATGTCCAGCCCTAGTCTCTC
CTTGGCTG

Query= MSMg01no324_j08.g1 MSMg01no324_j08.g1 CHROMAT_FILE:
MSMg01no324_j08.g1 PHD_FILE: MSMg01no324_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:56 2005
         (544 letters)



>mm_chr1_132187940_132188883
          Length = 944

 Score =  926 bits (479), Expect = 0.0
 Identities = 522/547 (95%), Gaps = 19/547 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacatcacacaattgcagaaactatctgcagctggcacaatcacacccctgctagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 caaacatcacacaattgcagaaactatctgcagctggcacaatcacacccctgctagagc 675

                                                                       
Query: 61  acgatgaaaattatagtcagctgctgtggacaatgtgaaacagccccatatccccaaacc 120
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 674 acgatgaaaatcatagtcagctgctgtggacaatgtgaaacagccccatatcaccaaacc 615

                                                                       
Query: 121 tggtattaaaatgaaagtgtatccttatattccttttttttt--aaagaattcagaattc 178
           || |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||
Sbjct: 614 tgatattaaaatgaaagtgtatccttatatttctttttttttaaaaagaattcagaattc 555

                                                                       
Query: 179 ttaatacacctaattttaagtcacacataatacagaaatgatacacgtcatgatttgcta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttaatacacctaattttaagtcacacataatacagaaatgatacacgtcatgatttgcta 495

                                                                       
Query: 239 tgggatgttttaactatgaaagtattaaggcaaaaacatacaaagttatcttgttaatgg 298
           || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgagatgttttgactatgaaagtattaaggcaaaaacatacaaagttatcttgttaatgg 435

                                                                       
Query: 299 ttgaaacttgaaaaatatttttaagtgaaactagaattaaatcactttcctcctgcttac 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttgaaacttgaaaaatatttttaagtgaaactagaattaaatcactttcctcctgcttac 375

                                                                       
Query: 359 tacaattttacatgtgataatttttctttatcctagctagctcccaagtaaa-gtaagta 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |      
Sbjct: 374 tacaattttacatgtgataatttttctttatcctagctagctcccaagtaaacg------ 321

                                                                       
Query: 418 agtataagtaagtaagatttacctaagctttacaacacagtagctgagcagtattaatct 477
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ----------agtaagatttacctaagctttacaacacagtagctgagcagtattaatct 271

                                                                       
Query: 478 attttaattctctaagctaatctggctacctcccaaccaaaattccagagatacttgcat 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 attttaattctctaagctaatctggctacctcccaaccaaaattccagagatacttgcat 211

                  
Query: 538 tttagta 544
           |||||||
Sbjct: 210 tttagta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)