BAC Information

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BAC

Clone NameMSMg01-324M08
Chromosome1 (Build37)
Map Location 26,932,880 - 26,933,560
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik
Downstream geneLOC677427, LOC100040952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324M08.T7 (MSMg01no324_m08.b1)MSMg01-324M08.TJ (MSMg01no324_m08.g1)
ACCAG442834AG442835
length750749
length of high quality
(start - end)
684 (47 - 730)674 (76 - 749)
definitionCHROMAT_FILE: MSMg01no324_m08.b1 PHD_FILE: MSMg01no324_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:10 2005CHROMAT_FILE: MSMg01no324_m08.g1 PHD_FILE: MSMg01no324_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGCCCACCGTCGGCTCAATACTGCCTAGGACATTGGTGAAGG
CCAGGAAGTAAAGTTCAACCTAATTTAGGTATTTGTCAAATCATTTCTTG
GAGGTACATATAATAAAACAATACTGAAAGAAAGCATAGAGATCCATCCA
CTGACTAACACAAGGACAAGTTTGGGGCATTTGTGCTACGGGATGCCAAG
GCTACAGGAGACTAAGTTTCCATGAAACTTTTTGCCTCAGGATTGCATCC
AAGATTTTGGGTCTGCCACATAGTTTTCCTGGAGTGGCTTTGGCAGGTCA
GTATATAAATTGAGAAGTTTTTGATTGTTAGGTGCCATTTATGATTCAAT
GACTCTCACTATTTTCACCCAAGATTCTCTCCATTCTTTGATAACATCCA
AAGTTCACGTGCTTCGTGAAAAGAGCAGCTGGAAACCACACTCTGGATTT
TTGTCCTCTTACCCATCCTTGTAATGCCATGTTCATTGGTGAGAACCTAT
CTCTGTAAACATTTATGAAATTTTAATTCTTGATACTTCTTACCTTTATA
TTCAGCTTATTATAACAGCCCATAGGCATAGCAAAAGATACCCACTTAAA
TTTGAATCACAAACTCACAGGTAATTTTTTAAAAGAAAATATTATTGTCT
GTCTGAATTATAATTTTCCCAAAGCTTTCATTTTGTATTTTGTTTGGTTG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAGGATTGGGATCTGCCCAGCGCA
GGAGAGCTTTGCCTGAGTATAGGCAGCAGACATCTCCGGGACCCCCCCAA
GTGTATCCTGCACAGACAGCTGGCCATTTTCCTGGCCAGAGGATAGGGAT
CTGCCCTGCATGGGAGCATTGTGCCTGAGCATAGGCAGGAGACATCTTCG
TTCTGGGACCCTGCGAGTTTACCCTGCACAGACATCTTGGTTACAGGACC
CCGCCGAGTGTGTCCTGCACAGCTCCAGAGAATACCAGATGGCAAAAGGC
AAACATAAGAATCCTACTAACAGAAATCAAGACCACTCACCATCATCAGA
ACACAGCACAACCACACCACCTAGTCCTGGGCACCCCAACACAACCGAAA
AGCTAGACCCAGATTTACAAGCGTATCTCATGATGATGGTAGAGGACATC
AAGAAGGACATTAATAACTCACTTAAAGAAATACAGGAGAACACTGCTAA
AGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAG
AAGTCCTTATAAAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATG
AACAAAACCATACTAGACATAAAAAGGTAAGTAGGCACAATAAAGAAAAA
CCAAACTGAGGCAACGCTGGAGATAGAAACCCTAGGAAAGAAAGCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_m08.b1 MSMg01no324_m08.b1 CHROMAT_FILE:
MSMg01no324_m08.b1 PHD_FILE: MSMg01no324_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:10 2005
         (684 letters)



>mm_chr1_26932677_26933760
          Length = 1084

 Score = 1294 bits (669), Expect = 0.0
 Identities = 678/681 (99%), Gaps = 1/681 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagcccaccgtcggctcaa-tactgcctaggacattggtgaaggccaggaagt 63
           ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccaagcccaaggtcggctcaaatactgcctaggacattggtgaaggccaggaagt 263

                                                                       
Query: 64  aaagttcaacctaatttaggtatttgtcaaatcatttcttggaggtacatataataaaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaagttcaacctaatttaggtatttgtcaaatcatttcttggaggtacatataataaaac 323

                                                                       
Query: 124 aatactgaaagaaagcatagagatccatccactgactaacacaaggacaagtttggggca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatactgaaagaaagcatagagatccatccactgactaacacaaggacaagtttggggca 383

                                                                       
Query: 184 tttgtgctacgggatgccaaggctacaggagactaagtttccatgaaactttttgcctca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgtgctacgggatgccaaggctacaggagactaagtttccatgaaactttttgcctca 443

                                                                       
Query: 244 ggattgcatccaagattttgggtctgccacatagttttcctggagtggctttggcaggtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggattgcatccaagattttgggtctgccacatagttttcctggagtggctttggcaggtc 503

                                                                       
Query: 304 agtatataaattgagaagtttttgattgttaggtgccatttatgattcaatgactctcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtatataaattgagaagtttttgattgttaggtgccatttatgattcaatgactctcac 563

                                                                       
Query: 364 tattttcacccaagattctctccattctttgataacatccaaagttcacgtgcttcgtga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattttcacccaagattctctccattctttgataacatccaaagttcacgtgcttcgtga 623

                                                                       
Query: 424 aaagagcagctggaaaccacactctggatttttgtcctcttacccatccttgtaatgcca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaagagcagctggaaaccacactctggatttttgtcctcttacccatccttgtaatgcca 683

                                                                       
Query: 484 tgttcattggtgagaacctatctctgtaaacatttatgaaattttaattcttgatacttc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgttcattggtgagaacctatctctgtaaacatttatgaaattttaattcttgatacttc 743

                                                                       
Query: 544 ttacctttatattcagcttattataacagcccataggcatagcaaaagatacccacttaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttacctttatattcagcttattataacagcccataggcatagcaaaagatacccacttaa 803

                                                                       
Query: 604 atttgaatcacaaactcacaggtaattttttaaaagaaaatattattgtctgtctgaatt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atttgaatcacaaactcacaggtaattttttaaaagaaaatattattgtctgtctgaatt 863

                                
Query: 664 ataattttcccaaagctttca 684
           |||||||||||||||||||||
Sbjct: 864 ataattttcccaaagctttca 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)