Query= MSMg01no324_m13.b1 MSMg01no324_m13.b1 CHROMAT_FILE:
MSMg01no324_m13.b1 PHD_FILE: MSMg01no324_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:11 2005
(669 letters)
>mm_chr1_79799602_79800670
Length = 1069
Score = 1164 bits (602), Expect = 0.0
Identities = 649/672 (96%), Gaps = 14/672 (2%)
Strand = Plus / Plus
Query: 8 gaattctctgtctccagtctagacagaatgcctctgggcaccgctaagctcactttcatt 67
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctctgtcttcagtctagacagaatgcctctgggcaccgctaagctcactttcatt 267
Query: 68 ctgctgagttgaatgtaagtagacgattagaccgttcggtactcgccgcacagttcttcg 127
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 268 ctgctgagttgaatgtaagtagacgattagactgttcggtactcgccgcacagttcttcg 327
Query: 128 taagaagttaacctttatacgagaaaaagaataaattaaagctacttttgagcttgc--- 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 taagaagttaacctttatacgagaaaaagaataaattaaagctacttttgagcttgcttt 387
Query: 185 -tttttttgtttttgttttttgttttgttttgttttg------tttttacattctacttt 237
||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 388 gtttttttgttttttttttttgttttgttttgttttgtttttttttttacattctacttt 447
Query: 238 gttttagaaaatacatggtattgtatttaaggtatacaatatgacagttagggcaggaca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gttttagaaaatacatggtattgtatttaaggtatacaatatgacagttagggcaggaca 507
Query: 298 cggtaaaagcatttctacggtagagccaattagcacgcccatcattcctcatagtttccg 357
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 508 cggtaaaagcatttctacggtagagccaattagcatgcccatcattcctcatagtttccg 567
Query: 358 gtttttaaataaaaaaaaaaaggagggagctaagtgagtggcccggtttcttctctcttt 417
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gtttt----taaacaaaaaaaggagggagctaagtgagtggcccggtttcttctctcttt 623
Query: 418 ctcaagtgcagatgcactatgaccagctaactcaaaccactgccaccacaaattataggt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcaagtgcagatgcactatgaccagctaactcaaaccactgccaccacaaattataggt 683
Query: 478 ataaatagactatatcctcaaaccacaagccaaaacgaaacccttcctgcctttagctgc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ataaatagactatatcctcaaaccacaagccaaaacgaaacccttcctgcctttagctgc 743
Query: 538 ctttgtcaggaattttcttatagcaacaagaaaaggaacttacacagcaacagagaacag 597
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 744 ctttgtcaggaattttcttatagcaacaagaaaaggaactcacacagcaacagagaacgg 803
Query: 598 ccggagacagcaactgtgcagtacgaccgcagagcagtcaaaaagtccttgttggcattc 657
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccagagacagcaactgtgcagtatgaccgcagagcagtcaaaaagtccttgttggcattc 863
Query: 658 taaaccgatggg 669
||||||||||||
Sbjct: 864 taaaccgatggg 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_m13.g1 MSMg01no324_m13.g1 CHROMAT_FILE:
MSMg01no324_m13.g1 PHD_FILE: MSMg01no324_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:11 2005
(633 letters)
>mm_chr1_79979943_79980975
Length = 1033
Score = 1170 bits (605), Expect = 0.0
Identities = 626/633 (98%)
Strand = Plus / Minus
Query: 1 ttgtctttttccctttgtgacatacacataaacagactcatgcaggtgtatcctgaacag 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 833 ttgtctttttccctttgtgacatacacataaacagactcgtgcaggtgtatcctgaacag 774
Query: 61 tgtttgagattcagggtcttcgcagcacacatatggaagaatgactgaggcattgcgatg 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 773 tgtttgagattcagggtcttcgcagcacacatattgaagaatgactgaggcattgcgatg 714
Query: 121 ggaagacagcacttctctgccttgcctttgcgctctggaaaattgagtccaagttagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 713 ggaagacagcacttctctgccttgcctttgcgctctggaaaattgagtccatgttagttg 654
Query: 181 tctctctgctcagccttctcagtaaacagttcacttccagccttcattagatgggctgca 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tctctctgctcagccttttcagtaaacagttcacttccagccttcattagatgggctgca 594
Query: 241 gaaagggggatcagagagctcaacagaggcctgaagatggctgatggatatcactcgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 593 gaaagggggatcagagagctcaacagaggcctgaagatggctgatggatatcacttgtgg 534
Query: 301 atgcaaaggagaccttcaccaggtaagtagattatggccagaatggtaggtagaaggctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 atgcaaaggagaccttcaccaggtaagtagattatggccagaatggtaggtagaaggctg 474
Query: 361 agggaggggcttgcttcagagtcagatgactggaagcttgtgagaaggccagagaatgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agggaggggcttgcttcagagtcagatgactggaagcttgtgagaaggccagagaatgtg 414
Query: 421 cattcagaggcagttgatggacagagccaaagtaaaataaaatgtaagaagattcagatg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 413 cattcagaggcagttgatggacagagccaaagtaaaataaaatgtaagaagactcagatg 354
Query: 481 ttcaggctggagaaacaataaagagacacaaacaagtgcacagtttggatcattgagttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttcaggctggagaaacaataaagagacacaaacaagtgcacagtttggatcattgagttt 294
Query: 541 ggaacaaaaggagccgagcaggcaggtctttaaagaagggaccacatggtttatatagaa 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggaacaaaaggagccaagcaggcaggtctttaaagaagggaccacatggtttatatagaa 234
Query: 601 tcgaatcacagcacaaaccattgcagtgagaag 633
|||||||||||||||||||||||||||||||||
Sbjct: 233 tcgaatcacagcacaaaccattgcagtgagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
