ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTCTGTAGCACCAGGCTGGCCTCAAACTCAGAAATTGCCTGCCTCT
GCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCGCCTGGCCACA
AGCAGAGAAAGCACTGAGAACATAGTTTGTGACATACAAATATATACAGA
TCTCCTATATGTGCCATTTCTGTTCTACTCAAACCGAAGTTTACCTAGCT
TATTCTGTCAATATTACTCTATCATAATAGTGAAACCTGCAAAATCAGGA
TTATTGTTTAAACCCATAGTTAGACCTCCATCTGAGTATATGGATATGCA
GCATTTTGATGGAAAATTACACAATTAAAAAACCTTTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTAGTTTACAAAATAGTTT
TCAACCACCTCTAATTTAGACTTGTATAAACTTTAGCAACAATCAGATTT
GAAGAAAATATCTATGAAAGTTTAAGATGAAACCTACATCACGGGCAGAG
GTGTGAGTGATCATTCTCCCAGTTTTTGGACTTAGAGAGACAGTGCTATG
GAATTCCAAGTGCATGCGTGACTTCCAGCAGGTGGTCCCTTTGAAGGCTG
GGTCATCAGGGGTTCATCTTTCCCAACCCCCTCTTGCTCTCACCCCACAC
CGTTTCCACATACTTCTCTGCTTGCAGGGTC

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACCCATATAAGAAGGGAAAAGGAGA
CAGCTAATAGCATAGTCACAGATACGACGTGAGTCCAAGCAAGCATTGAT
TCTTTGATGTCACCTTTTCCATTTACCAGAGTGGAGAGTAGGAAAGAAAG
CAAGGGTGCACATGGGGCAAGGGTCACCCACAGAGGACTAATCACAATCA
TAGTTACTCTTGACAACTATAGTTCAGGGAGTCACCGGACAGCATCACCT
AACCAACACGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTACAGCAAAGGGAGAGGCCTTGAAAGAAAAGTAACAAGCTTTACC
CTATTTCCCTCCTAAACCCCCCTCATTGATACAAGCTTCCGCGCCAACCT
AGAAACCCAATATAAGGAATCTTCACAATGTAAGAAAGCCTCACGGGTTT
TGTTTTTTGCTTTTGTTTCTGCAACTGAAATAAGAGCGGTTTACAATTTT
ATCTTAACACGTCGCTACCACCCCTTTTTTTATCTTATTCCCCCTCTCTC
TGACTTATTTTTTTTTATCGTTTGTCCCTGCCCTCCCCCACACACTTTAT
CCCCCTTTTTTATCAGAACGACTTGATTTTCATTTGCAGCACTCACTCCC
TCCCTTCTTCCTTTTTTTTTTTTTTCTGTTTCTTCTCCCTCCTTAATCCT
G

Query= MSMg01no324_m23.b1 MSMg01no324_m23.b1 CHROMAT_FILE:
MSMg01no324_m23.b1 PHD_FILE: MSMg01no324_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:13 2005
         (683 letters)



>mm_chr1_157291472_157292554
          Length = 1083

 Score = 1207 bits (624), Expect = 0.0
 Identities = 640/648 (98%), Gaps = 6/648 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagcaccaggctggcctcaaactcagaaattgcctgcctctgcctcc 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ggaattcactctgtag-accaggctggcctcaaactcagaaattgcctgcctctgcctcc 584

                                                                       
Query: 64  caagtgctgggattaaaggcgtgcgccaccaccgcctggccacaagcagagaaagcactg 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 583 caagtgctgggattaaaggcgtgcaccaccaccgcctggccacaagcagagaaagcactg 524

                                                                       
Query: 124 agaacatagtttgtgacatacaaatatatacagatctcctatatgtgccatttctgttct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agaacatagtttgtgacatacaaatatatacagatctcctatatgtgccatttctgttct 464

                                                                       
Query: 184 actcaaaccgaagtttacctagcttattctgtcaatattactctatcataatagtgaaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 463 actcaaaccgaagtttacctagcttattctgtcaatattactctatcataatagtgaaat 404

                                                                       
Query: 244 ctgcaaaatcaggattattgtttaaacccatagttagacctccatctgagtatatggata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgcaaaatcaggattattgtttaaacccatagttagacctccatctgagtatatggata 344

                                                                       
Query: 304 tgcagcattttgatggaaaattacacaattaaaaaacctttttctttctttctttctttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgcagcattttgatggaaaattacacaattaaaaaacctttttctttctttctttctttc 284

                                                                       
Query: 364 tttctttctttctttctttttttttttagtttacaaaatagttttcaaccacctctaatt 423
           |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttctttctttcttt-----tttttttagtttacaaaatagttttcaaccacctctaatt 229

                                                                       
Query: 424 tagacttgtataaactttagcaacaatcagatttgaagaaaatatctatgaaagtttaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tagacttgtataaactttagcaacaatcagatttgaagaaaatatctatgaaagtttaag 169

                                                                       
Query: 484 atgaaacctacatcacgggcagaggtgtgagtgatcattctcccagtttttggacttaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atgaaacctacatcacgggcagaggtgtgagtgatcattctcccagtttttggacttaga 109

                                                                       
Query: 544 gagacagtgctatggaattccaagtgcatgcgtgacttccagcaggtggtccctttgaag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gagacagtgctatggaattccaagtgcatgcgtgacttccagcaggtggtccctttgaag 49

                                                           
Query: 604 gctgggtcatcaggggttcatctttcccaaccccctcttgctctcacc 651
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  gctgggtcatcaggggttcatctttcccaaccccctcttgctctcacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_m23.g1 MSMg01no324_m23.g1 CHROMAT_FILE:
MSMg01no324_m23.g1 PHD_FILE: MSMg01no324_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:13 2005
         (289 letters)



>mm_chr1_157122784_157123472
          Length = 689

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacccatataagaagggaaaaggagacagctaatagcatagtcacagatacgacgtgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacccatataagaagggaaaaggagacagctaatagcatagtcacagatacgacgtgagt 260

                                                                       
Query: 61  ccaagcaagcattgattctttgatgtcaccttttccatttaccagagtggagagtaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagcaagcattgattctttgatgtcaccttttccatttaccagagtggagagtaggaa 320

                                                                       
Query: 121 agaaagcaagggtgcacatggggcaagggtcacccacagaggactaatcacaatcatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaagcaagggtgcacatggggcaagggtcacccacagaggactaatcacaatcatagt 380

                                                                       
Query: 181 tactcttgacaactatagttcagggagtcaccggacagcatcacctaaccaacacggggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactcttgacaactatagttcagggagtcaccggacagcatcacctaaccaacacggggt 440

                                                     
Query: 241 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)