BAC Information

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BAC

Clone NameMSMg01-324N04
Chromosome1 (Build37)
Map Location 193,517,568 - 193,518,036
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7
Downstream geneLpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324N04.T7 (MSMg01no324_n04.b1)MSMg01-324N04.TJ (MSMg01no324_n04.g1)
ACCAG442869AG442870
length760757
length of high quality
(start - end)
473 (46 - 518)333 (76 - 408)
definitionCHROMAT_FILE: MSMg01no324_n04.b1 PHD_FILE: MSMg01no324_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:14 2005CHROMAT_FILE: MSMg01no324_n04.g1 PHD_FILE: MSMg01no324_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAATCCGCGG
AATTCAGTGGATGTTACCATAAATGAATAATGAGAGAACTGTATACTCTG
TCACGTAGGAAGTAATCAGGAAAGTTGCTAGAAACTTTTCATGGCAATGT
AAATAATAAAGTAAACCAATTACAGTTCATGGACAAAACTGATAAGCTGT
TACAAACAGCCACGTCAGAGGAAGCTGTACCCTGTAAAAATGTGGCAAGA
AGCAAATTACCTTGTCTCTGCTAACTTCAAAATACCATTGACAGCAGGGC
TGGATTTATGTTACATGATATATTTCACAGATTAAAAACCAGGGTCTAGA
GTTACTAAGGATGACATGGGTGAAGGTAGCAACTGCATACAGGAGATATG
AATATCACAGTAGCTGTGGCTAATGCGCAATCAATCATCTTCTGAAGCAG
CAGGAGGGTTAATAAGTATCCTCACAGACTAACACACAACCCAGACAATT
CCCAAGAATTCTGAGGCCCATGGCTTAGAAAGTGTCTGTTCCAATAGTTC
CCAAAGTAGTCAAGTATTTCCTAAAGTGCGGTCAATCTCAGCACTAATAT
ACAAGAGGGTGCCGTGCCCACAGAGATGGTATCTGAAAAGTGTACACTTA
TTTTATTATGATTCTATCCAAAAACACTTAACCCATAATCTACCCACAAG
ACATTCACCCAATCCTTCTCTGAACAAATGCTCTTATACAAATATCTACA
CCTGTATTTC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGTTACACAGAGA
GATCCTGTCTCAAACAAACAAACAAACAAACAAACAAACAAACAACCCAA
AGTGGATAATTCCTGAAGAAAACCCCTGAAGAATTCTTCTGGCAACCACA
TGCACACACATATGTGTTGGGAGCCGACTCTTAGCAGAAAGGGCCTATCA
TCTCTGCAGCCATCTCGGGCTAGTTACTTACAGGTGGTACTTTTTCACCC
TGACAAGAAACTTGTTTTCCTAGCATGATGTTTTTGCAAGAAGCCCACCA
CAGCTGAACACACTCTGATAACATCTTGGTTTTCTCCTATATATCCCGGA
CTTGTGGTTAAGTGTCTCCAGCTGCATTCCCCAGCTTGTACTTATATACC
CATAGTTGCCTTCCAACTTGACTTAAGACTTGATCCTTGATCAGATAGCC
TGTCTTGCCTCCATTCTTCAAGTCTCTTACCCCTCAGTCCCCACTTTCTC
TCTTGCAGACCCTGTTGAATGACTCGTGTACTGGGTCACATATGTGAACA
CACGTACACACACACATACATACACACACTTGTTGAGTATGTCATTGGAG
GAACTCTTCTTGATAAGTTGGAGATATATGGCTGTCTCCTGTGACAGAAT
CCAAAGTTCTCCAAAGATATACCGTCCCACTCATAACTGTCCAGAGGAGT
TCTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_n04.b1 MSMg01no324_n04.b1 CHROMAT_FILE:
MSMg01no324_n04.b1 PHD_FILE: MSMg01no324_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:14 2005
         (473 letters)



>mm_chr1_193517365_193518236
          Length = 872

 Score =  832 bits (430), Expect = 0.0
 Identities = 460/470 (97%), Gaps = 1/470 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtggatgttaccataaatgaataatgagagaactgtatactctgtcacgtag 63
           ||||||||||||||| ||  || |||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattcagtggatggtaagatgaatgaataatgagagaacggtatactctgtcacgtag 263

                                                                       
Query: 64  gaagtaatcaggaaagttgctagaaacttttcatggcaatgtaaataataaagtaaacca 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 gaagtaatcaggaaagttgctagacacttttcatggcaatgtaaataataaagtaaacca 323

                                                                       
Query: 124 attacagttcatggacaaaactgataagctgttacaaacagccacgtcagaggaagctgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attacagttcatggacaaaactgataagctgttacaaacagccacgtcagaggaagctgt 383

                                                                       
Query: 184 accctgtaaaaatgtggcaagaagcaaattaccttgtctctgctaacttcaaaataccat 243
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 accctgtaaaaatgtggcaagaagcaaattaccttgtctctgctaatttcaaaataccat 443

                                                                       
Query: 244 tgacagcagggctggatttatgttacatgatatatttcacagattaaaaaccagggtcta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgacagcagggctggatttatgttacatgatatatttcacagattaaaaaccagggtcta 503

                                                                       
Query: 304 gagttactaaggatgacatgggtgaaggtagcaactgcatacaggagatatgaatatcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagttactaaggatgacatgggtgaaggtagcaactgcatacaggagatatgaatatcac 563

                                                                       
Query: 364 agtagctgtggctaatgcgcaatcaatcatcttctgaagcagcaggagggttaataagta 423
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 564 agtagctgtggctaatgggcaatcaatcaccttctgaagcagcaggagggt-aataagta 622

                                                             
Query: 424 tcctcacagactaacacacaacccagacaattcccaagaattctgaggcc 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcctcacagactaacacacaacccagacaattcccaagaattctgaggcc 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space:   399106
Effective search space used:   399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)