BAC Information

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BAC

Clone NameMSMg01-325A08
Chromosome1 (Build37)
Map Location 74,855,275 - 75,011,514
singlet/doubletdoublet
Overlap geneLOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a
Downstream geneNhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325A08.T7 (MSMg01no325_a08.b1)MSMg01-325A08.TJ (MSMg01no325_a08.g1)
ACCAG443013AG443014
length735752
length of high quality
(start - end)		373 (49 - 421)347 (74 - 420)
definitionCHROMAT_FILE: MSMg01no325_a08.b1 PHD_FILE: MSMg01no325_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:29 2005CHROMAT_FILE: MSMg01no325_a08.g1 PHD_FILE: MSMg01no325_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,855,275 - 74,855,646)(75,011,168 - 75,011,514)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCGCG
GAATTCCTTGCTCTGTCCCTTAAATGAAGTAGTTGAAGTCTATTTAGCGG
CTGATTCAGTAATTTAGTATTTGCTCTACACTGGGGAAGGGTACCTTAAC
AAAAAATAGCACGAGACAGGGTCTCCCTTTAATGTAAGAAATTGGACAGG
CATCCAAGAGCTGAATTATTTCGGTTGAGGGATTATAGGTGGTTTAAAAT
TTGTTCACTGTCTATCAGCAGTTTTCATTTGTTTAAAATGAGCCTATTTG
ACTTTGTCATCGTAATGATTCCATACATGAATATTTTGGTCCAAAAGTGG
GCATCACACTATTTTTTTTTGAGAAGGTTTAAAACACTCTCGAGGAGGAG
GCAGTTAGATATCTATGTGTTCGCCCCCCAGCCTAGTCTAAATATCTAGT
TCTAGCCCAGCCAAGGCTACATAGAGAACCTTATTTTAAAAAACATGGGT
GTATAACAACTGTATGTGTAATGGCCCACAGAGGCCAGAAGAGGGCGTCG
GTCCCCTGAGACTGGAGTCGGAGGCAGCTGTTAACTGCTGCAACGTGAGT
GCTGTACCTAAGCCCAGATCTTGGAAGAGAAGCTCTGGCTCCCTAACACC
AGCTCCACCCTGTGTTATTACTTCTGGTCAGCCCTAAAAAAGATAAAAAA
TATAAATACCCGCTACACTCAATGGAATCGGCTAT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCGTGGCTGCTCCATAAATTTTATTCC
GTAAATATTAGTTTTCCCTGTGTTTAATAAAGCAGTGGCCCACCTCCCCG
CCTACCCGCCCGCTCCCCGGGGCCGGGGCTGGGGCCAGGGCTGGCTGGTG
GGAGAAGGGACTCTTTCAATTGCTTTGGAGTATTTTTAGAAAAAAAAATA
ATATAAGGTGGTTTACACGAGCAAGCCAGCAAGCCAGGAGCAGGGCTTGG
GACCTCGAGGAAGTTCCTGCAACTGGATCTAAAAAGTAGAGAAACAGCGC
CACCTAGGTCGCGAGGCCTACTTGGCCATGCTGGTGATTCCCCCATGCTG
TCAGCTAGGGACCAGCCAGCCACCGCAGGTCACTCCTTGCTGAAGAGCTG
GATAGTACTCCCTTACCTGGTGTCTTATGGAGTTTCCCAGCAGCCCTTCC
AAGTAGAGACCTATCTGGGTTCTGGAAAAACCCACCAGTGGCCATTCCTT
TCTCTTGATTCCAGGAATCTAGCCTCCAGGCCCCAGGAGTGTTTCCCAGG
GGATAGTAGATGTAAACTTGGAAAAGAAAGAACCCCCTTCATTCTTCTAT
TCTTTCCCTGGGAACTCACTAGAGGCTTTTGGTGAACTTAAATTAAAGCG
CCCGGTGTCTTCCTGTTACTCTTGCTACCGGGCCTAAACCGAAGATACTT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_a08.b1 MSMg01no325_a08.b1 CHROMAT_FILE:
MSMg01no325_a08.b1 PHD_FILE: MSMg01no325_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:29 2005
         (373 letters)



>mm_chr1_74855074_74855846
          Length = 773

 Score =  673 bits (348), Expect = 0.0
 Identities = 366/372 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattccttgctctgtcccttaaatgaagtagttgaagtctatttagcggctgattcag 61
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattccttgctctgtcctttaaatgaagtagttgaagtctatttagcggctgattcag 261

                                                                       
Query: 62  taatttagtatttgctctacactggggaagggtaccttaacaaaaaatagcacgagacag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taatttagtatttgctctacactggggaagggtaccttaacaaaaaatagcacgagacag 321

                                                                       
Query: 122 ggtctccctttaatgtaagaaattggacaggcatccaagagctgaattatttcggttgag 181
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggtctccctttaatgtaagaaatcggacaggcatccaagagctgaattatttcggttgag 381

                                                                       
Query: 182 ggattataggtggtttaaaatttgttcactgtctatcagcagttttcatttgtttaaaat 241
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 ggattataggtggtttaaaatttgttcaccgtctatcagcagttttcatttgtttaaaat 441

                                                                       
Query: 242 gagcctatttgactttgtcatcgtaatgattccatacatgaatattttggtccaaaagtg 301
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 442 gagcctatttgactttgtcatcgtaatgattccatacgtgaatattttggtccaaaagtg 501

                                                                       
Query: 302 ggcatcacactatttttttttgagaaggtttaaaacactctcgaggaggaggcagttaga 361
           ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 502 ggcatcacactatttttttttgaaaaggtttaaaacactctcgagaaggaggcagttaga 561

                       
Query: 362 tatctatgtgtt 373
           ||||||||||||
Sbjct: 562 tatctatgtgtt 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_a08.g1 MSMg01no325_a08.g1 CHROMAT_FILE:
MSMg01no325_a08.g1 PHD_FILE: MSMg01no325_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:29 2005
         (347 letters)



>mm_chr1_75010968_75011714
          Length = 747

 Score =  656 bits (339), Expect = 0.0
 Identities = 345/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgtggctgctccataaattttattccgtaaatattagttttccctgtgtttaataaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcgtggctgctccataaattttattccgtaaatattagttttccctgtgtttaataaagc 488

                                                                       
Query: 61  agtggcccacctccccgcctacccgcccgctccccggggccggggctggggccagggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtggcccacctccccgcctacccgcccgctccccggggccggggctggggccagggctg 428

                                                                       
Query: 121 gctggtgggagaagggactctttcaattgctttggagtatttttagaaaaaaaaataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gctggtgggagaagggactctttcaattgctttggagtatttttagaaaaaaaaataata 368

                                                                       
Query: 181 taaggtggtttacacgagcaagccagcaagccaggagcagggcttgggacctcgaggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taaggtggtttacacgagcaagccagcaagccaggagcagggcttgggacctcgaggaag 308

                                                                       
Query: 241 ttcctgcaactggatctaaaaagtagagaaacagcgccacctaggtcgcgaggcctactt 300
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 307 ttcctgcaactggacctaaaaagtagagaaacagcgccacctaggtcacgaggcctactt 248

                                                          
Query: 301 ggccatgctggtgattcccccatgctgtcagctagggaccagccagc 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggccatgctggtgattcccccatgctgtcagctagggaccagccagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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