BAC Information

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BAC

Clone NameMSMg01-325C16
Chromosome1 (Build37)
Map Location 131,307,073 - 131,307,653
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneDars, LOC620659, Cxcr4, LOC100042732
Downstream geneLOC100042745, LOC100042740, Daf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325C16.T7 (MSMg01no325_c16.b1)MSMg01-325C16.TJ (MSMg01no325_c16.g1)
ACCAG443125AG443126
length717719
length of high quality
(start - end)
389 (46 - 434)584 (80 - 663)
definitionCHROMAT_FILE: MSMg01no325_c16.b1 PHD_FILE: MSMg01no325_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:38 2005CHROMAT_FILE: MSMg01no325_c16.g1 PHD_FILE: MSMg01no325_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAATGAATCCGCGG
AATTCTCACCTGATGACCACCGAATGGCAGAGAAGCACCTGAAAAAATGC
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAG
AAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTACAACACCCAGAAGCTGGGAAGGAACCCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAA
AGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAAC
CTAAGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAA
GAAAAATGAAGACTGAN
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAAACATATTTGATTCA
TAAAAATTAAAAGGAATGAGTGAATAAATTAATTGCAAAAACAGAGTGTA
CCCAATGTCAAATGCAGCACAATTGGATCACGTATTGGATTCTTAGGTGA
GTATCTGTGCCTGCTTGAAGAAGCCATCACAACCAGGCCACTTCCCTGAC
TGTAGATTCCAGCAATTTGTCAGTGAAACGATGTTTTTCCCAGGAAGGAA
AATAATCTTGCTGCAAAGAAACCTTAACGACTATTTTAAAAATAGTGTGT
TTCCCTGTGTAGCCATTCGTCCCCAAGTAGCAACGAGGGGACATGCTTTC
CTTCCCCTCTGTGCTCCGCAAAGCTCATCTAAACAGGGAGTTACTGTCAA
CTTTTAATAGAAATGCCTGGAGCAAGCTGGTAAGCAAACCCAGGGGTTTC
ATGGTCTCTGGTAAATAATCAAGGCTTATTGTGGGATACTTTCCTGTCTT
TTATAATAAAAATTGAAATGAATGGAAATGATGTGCCTCTTTCTAAAGCA
CTACTTTCAGTTTGATTTACTTCCCTTGCAACAACTACTATGTTCCATAA
AGAAAGACTTANAGACACACAGAGCTAGAAACCTAGTCCTTTGCACTTTG
ATTTCTCACTTTAAATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_c16.g1 MSMg01no325_c16.g1 CHROMAT_FILE:
MSMg01no325_c16.g1 PHD_FILE: MSMg01no325_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:39 2005
         (584 letters)



>mm_chr1_131306873_131307855
          Length = 983

 Score = 1087 bits (562), Expect = 0.0
 Identities = 577/582 (99%), Gaps = 1/582 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaaaaacatatttgattcataaaaattaaaaggaatgagtgaataaattaattgcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 781 tctaaaaacatatttgattcataaaaattaaaaggaatgagtgaataaattaattacaaa 722

                                                                       
Query: 61  aacagagtgtacccaatgtcaaatgcagcacaattggatcacgtattggattcttaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aacagagtgtacccaatgtcaaatgcagcacaattggatcacgtattggattcttaggtg 662

                                                                       
Query: 121 agtatctgtgcctgcttgaagaagccatcacaaccaggccacttccctgactgtagattc 180
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 661 agtatctgtgcctgcttgaagaagccatcacaaccaggccactttcctgactgtagatac 602

                                                                       
Query: 181 cagcaatttgtcagtgaaacgatgtttttcccaggaaggaaaataatcttgctgcaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagcaatttgtcagtgaaacgatgtttttcccaggaaggaaaataatcttgctgcaaaga 542

                                                                       
Query: 241 aaccttaacgactattttaaaaatagtgtgtttccctgtgtagccattcgtccccaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaccttaacgactattttaaaaatagtgtgtttccctgtgtagccattcgtccccaagta 482

                                                                       
Query: 301 gcaacgaggggacatgctttccttcccctctgtgctccgcaaagctcatctaaacaggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcaacgaggggacatgctttccttcccctctgtgctccgcaaagctcatctaaacaggga 422

                                                                       
Query: 361 gttactgtcaacttttaatagaaatgcctggagcaagctggtaagcaaacccaggggttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 421 gttactgtcaacttttaatagaaatgcctggagcaagctggtaagcagacccaggggttt 362

                                                                       
Query: 421 catggtctctggtaaataatcaaggcttattgtgggatactttcctgtcttttataataa 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catggtctctggtaaataat-aaggcttattgtgggatactttcctgtcttttataataa 303

                                                                       
Query: 481 aaattgaaatgaatggaaatgatgtgcctctttctaaagcactactttcagtttgattta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaattgaaatgaatggaaatgatgtgcctctttctaaagcactactttcagtttgattta 243

                                                     
Query: 541 cttcccttgcaacaactactatgttccataaagaaagactta 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cttcccttgcaacaactactatgttccataaagaaagactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space:   558502
Effective search space used:   558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)