BAC Information

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BAC

Clone NameMSMg01-325H09
Chromosome1 (Build37)
Map Location 169,189,922 - 169,190,187
singlet/doubletsinglet
Overlap geneUck2
Upstream geneLOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik
Downstream geneLOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325H09.T7 (MSMg01no325_h09.b1)MSMg01-325H09.TJ (MSMg01no325_h09.g1)
ACCAG443344AG443345
length731734
length of high quality
(start - end)
271 (97 - 367)64 (348 - 411)
definitionCHROMAT_FILE: MSMg01no325_h09.b1 PHD_FILE: MSMg01no325_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:58 2005CHROMAT_FILE: MSMg01no325_h09.g1 PHD_FILE: MSMg01no325_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCCTCCCAAAACCCATTCCCGGTCCCTGACTGGATTGCCTGTTA
CTTTACGGGAAAGACGGCCCCGAAGAAGACATTTATAAATAGCAGCAGCT
CCTGCTTCGTCACATCTTGCTGCAGAGCGACACCCACAGTTGAAACACAT
TTCAGCACTGACAGACCCCAGCACGGCAGGAAGCAAAACTGTCCTGCATA
CATATTCAGTGACTTTCTTTTCCTCTTGCAGCCTCCTTCTGTCCTGCCTA
GCCCACATAGCGTCTGTGAGCTGAGCTGCACATTCCAGGGTTTCTGTGGG
TGTCTGAGCACATGCACGCCTGTAAAGTGTGTGCACTGCAAATGTCTTTA
ACTTATCGCCACAAAGGAACATTGGGAAGAGGCTCATAGAGGTGGAATCC
GTCTGCTCAGCCTCTGCAAGCCTCGGAGCAAGACGGATTAGCTCCTCTGG
GGTCTGTGCGAGTGCATGCAGAGGGTGGCGCTTTGCTGGCTATTAAGACC
CAGTACCCTGGACATGCTAAACAGTAGTCTACTGAAGTGGAAACTTAAGG
GTTCTCTGGAAAGTCGGCTGGATTGCATAGAAAGAACACGATGGAGCCTT
TATCTGAAGCGAACACAGGTGAAAGAAAGCAGACTTGTGATAGAAGGTTT
CGCTGAAACAGACACGGTAGACAGGATGTTC
ATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAGTAGGGCTTCACACAGAATGGTG
TAATGTCTGAGAACTGCCGGGCATGTTAGAGACTGTATATGTTGTATTCA
CAAGAGAGTGCCCAAGATAGAAAGAATTCATTTTCCTATTCCACCTCCAG
CATCTACCAGGTTCCCAGAGCAAGTAGATTTCTCCTGCATTCATAGCACC
ATGCCTTCTTGCCCCATTAATCAGACTGTCCTGCACCAAGTCCCATCTCT
CAGGGTCCTGCTCTCTGATAGTATACAGTTCAGTCAGTGGGAGCTAAAGA
GTTGAGCGTTACACTTCTTGGGTGACCTTTACCTTTTAATTGGGGCTATA
GACAATGCCTTAATCTGAAGGAGTAGCTTGAATGCTGGGAATTTCAAGGG
TAGAAGTGGGCCAGAAAGAGAGATTAGCTTTTTTCTTACGAGGGCATTTT
AGAGCCTCCTCTTTCGCATACCCATCTTTAAAGTCAGCTCATACATACAT
GAGCACTAACAAGCGCACTTACCTACATCTACATCCCATAATTTTGGAAT
ACCTCCCTTGCATTGGCCCTATCTTTAAACATGAAAATAAGTTATACATG
AACCAGCTAAATTAATTCAAACCTCATTGGGATATGCAGCCTATTTTTTC
ACCGGCCACCAACCATCTGGCCTATCGCAGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_h09.b1 MSMg01no325_h09.b1 CHROMAT_FILE:
MSMg01no325_h09.b1 PHD_FILE: MSMg01no325_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:58 2005
         (271 letters)



>mm_chr1_169189722_169190392
          Length = 671

 Score =  491 bits (254), Expect = e-143
 Identities = 263/266 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttactttacgggaaagacggccccgaagaagacatttataaatagcagcagctcctgct 60
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 466 gttactttacgggaaagacggccccaaataagacatttataaatagcagcagctcctgct 407

                                                                       
Query: 61  tcgtcacatcttgctgcagagcgacacccacagttgaaacacatttcagcactgacagac 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcgtcacatcttgctgcagagcggcacccacagttgaaacacatttcagcactgacagac 347

                                                                       
Query: 121 cccagcacggcaggaagcaaaactgtcctgcatacatattcagtgactttcttttcctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cccagcacggcaggaagcaaaactgtcctgcatacatattcagtgactttcttttcctct 287

                                                                       
Query: 181 tgcagcctccttctgtcctgcctagcccacatagcgtctgtgagctgagctgcacattcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgcagcctccttctgtcctgcctagcccacatagcgtctgtgagctgagctgcacattcc 227

                                     
Query: 241 agggtttctgtgggtgtctgagcaca 266
           ||||||||||||||||||||||||||
Sbjct: 226 agggtttctgtgggtgtctgagcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)