BAC Information

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BAC

Clone NameMSMg01-325I09
Chromosome1 (Build37)
Map Location 169,020,076 - 169,190,215
singlet/doubletdoublet
Overlap geneC030014K22Rik, Uck2
Upstream geneDusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102
Downstream geneLOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325I09.T7 (MSMg01no325_i09.b1)MSMg01-325I09.TJ (MSMg01no325_i09.g1)
ACCAG443391AG443392
length690718
length of high quality
(start - end)
351 (47 - 397)346 (76 - 421)
definitionCHROMAT_FILE: MSMg01no325_i09.b1 PHD_FILE: MSMg01no325_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:02 2005CHROMAT_FILE: MSMg01no325_i09.g1 PHD_FILE: MSMg01no325_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,189,868 - 169,190,215)(169,020,076 - 169,020,421)
sequence
GAACTACTATCTGCAGAGAATCCGCGGAATTCAGTCCACTTACCACCCAT
TCCCGGTCCCTGTCTGGATTGCCTGTTACTTTACGGGAAAGACGGCCCCA
AATAAGACATTTATAAATAGCAGCAGCTCCTGCTTCGTCACATCTTGCTG
CAGAGCGGCACCCACAGTTGAAACACATTTCAGCACTGACAGACCCCAGC
ACGGCAGGAAGCAAAACTGTCCTGCATACATATTCAGTGACTTTCTTTTC
CTCTTGCAGCCTCCTTCTGTCCTGCCTAGCCCACATAGCGTCTGTGAGCT
GAGCTGCACATTCCAGGGTTTCTGTGGGTGTCTGAGCACATGCAGGCCTG
TAGAGTGTGTGCACTGGGAATGTCTTTAACTTATCGCCAGAATGCACCCC
CGCCCAAGAGGCTCAGAGAGGTGGAATCCGTCTGCTCTGCCTCTGCAAGC
CTCGGTGCAAGACGGATTAGCTCCTCTGGCGTCTGCGCGAGTGCATGCAG
AGGTTGGTGCTTTGCTGGGGATTAAGCCCAGGACCCTGGGCATGCTAGAC
AGTACTCTACTGAAGTGGAAACTTAAGGGTTCTCTGGAAAGTCGCTTGGA
CCGTATAGAAAGAACACGAAGGAGCCTTTAGCTGAAGTGGACACAGGTGA
AAGAAGGCAGACTTGCGATAGAATTGCTCGCTGAAGCAAA
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAGTAGTGCTTCACACAGAATGG
TGTAATGTCTGAGAACTGCCGGGCATGTTAGAGACTGTATATGTTGTATT
CACAAGAGAGTGCCCAAGATAGAAAGAATTCATTTTCCTATTCCACCTCC
AGCATCTACCAGGTTCCCAGAGCAAGTAGATTTCTCCTGCATTCATAGCA
CCATGCCTTCTTGCCCCATTAATCAGACTGTCCTGCACCAAGTCCCATCT
CTCAGGGTCCTGCTCTCTGATAGGAAACAGTTCAGTCAGTGGGTGCTAAA
GAGTTGAGCGTTACACTTCTTGGGTGACCTTTACCTTTTAATTGGGGCTA
TAGACAATGCCTTAATCTGAACCCCACCACCTTGAATGCTGGGAATTTCA
GGTGCAGAAGTGGGCCAGTAAGAGAGATTAGTTTTTTTCTTAGGAGGGCA
TTTTAGAGCCTCCTCTTTCCCATACCCATCTTTAAAGTCAGCTCATACAT
ACATGAGCACAAACAAGCACACTTACCTACATCTACATCCCATAATTTTG
GAATACCTCCCTTGCATTGGCCCTATCTTTAAACATAAAAATAAATTAGA
AATGAACCAGCTAAATTAATTCAAACCTCATTGGGAAATGCAGCCTATTT
TTTCACCGGTCACCAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_i09.b1 MSMg01no325_i09.b1 CHROMAT_FILE:
MSMg01no325_i09.b1 PHD_FILE: MSMg01no325_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:02 2005
         (351 letters)



>mm_chr1_169189668_169190418
          Length = 751

 Score =  665 bits (344), Expect = 0.0
 Identities = 347/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattcccggtccctgtctggattgcctgttactttacgggaaagacggccccaaataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ccattcccggtccctgtctggattgcctgttactttacgggaaagacggccccaaataag 489

                                                                       
Query: 61  acatttataaatagcagcagctcctgcttcgtcacatcttgctgcagagcggcacccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acatttataaatagcagcagctcctgcttcgtcacatcttgctgcagagcggcacccaca 429

                                                                       
Query: 121 gttgaaacacatttcagcactgacagaccccagcacggcaggaagcaaaactgtcctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gttgaaacacatttcagcactgacagaccccagcacggcaggaagcaaaactgtcctgca 369

                                                                       
Query: 181 tacatattcagtgactttcttttcctcttgcagcctccttctgtcctgcctagcccacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tacatattcagtgactttcttttcctcttgcagcctccttctgtcctgcctagcccacat 309

                                                                       
Query: 241 agcgtctgtgagctgagctgcacattccagggtttctgtgggtgtctgagcacatgcagg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 308 agcgtctgtgagctgagctgcacattccagggtttctgtgggtgtctgagcacacgcagg 249

                                                           
Query: 301 cctgtagagtgtgtgcactgggaatgtctttaacttatcgccagaatg 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cctgtagagtgtgtgcactgggaatgtctttaacttatcgccagaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no325_i09.g1 MSMg01no325_i09.g1 CHROMAT_FILE:
MSMg01no325_i09.g1 PHD_FILE: MSMg01no325_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:02 2005
         (346 letters)



>mm_chr1_169019876_169020621
          Length = 746

 Score =  638 bits (330), Expect = 0.0
 Identities = 342/346 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagtagtgcttcacacagaatggtgtaatgtctgagaactgccgggcatgttagagac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagtagtgcttcatacagaatggtgtaatgtctgagaactgccgggcatgttagagac 260

                                                                       
Query: 61  tgtatatgttgtattcacaagagagtgcccaagatagaaagaattcattttcctattcca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgtatatgttgtattcacaagagagtgcccaagatagaaagaattcattttcatattcca 320

                                                                       
Query: 121 cctccagcatctaccaggttcccagagcaagtagatttctcctgcattcatagcaccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccagcatctaccaggttcccagagcaagtagatttctcctgcattcatagcaccatg 380

                                                                       
Query: 181 ccttcttgccccattaatcagactgtcctgcaccaagtcccatctctcagggtcctgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttcttgccccattaatcagactgtcctgcaccaagtcccatctctcagggtcctgctc 440

                                                                       
Query: 241 tctgataggaaacagttcagtcagtgggtgctaaagagttgagcgttacacttcttgggt 300
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tctgataggcaacagttcagtcagtgggtgctaaagagttgagtgttacacttcttgggt 500

                                                         
Query: 301 gacctttaccttttaattggggctatagacaatgccttaatctgaa 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctttaccttttaattggggctatagacaatgccttaatctgaa 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)