BAC Information

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BAC

Clone NameMSMg01-325L01
Chromosome1 (Build37)
Map Location 171,080,829 - 171,103,031
singlet/doubletdoublet
Overlap genenone
Upstream genePbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325L01.T7 (MSMg01no325_l01.b1)MSMg01-325L01.TJ (MSMg01no325_l01.g1)
ACCAG443512AG443513
length732730
length of high quality
(start - end)		688 (45 - 732)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no325_l01.b1 PHD_FILE: MSMg01no325_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:14 2005CHROMAT_FILE: MSMg01no325_l01.g1 PHD_FILE: MSMg01no325_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,102,557 - 171,103,031)(171,080,829 - 171,081,482)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCGACAGAGGAATATCAAACGGCAAAGAAGCACTTAAAGAAACTTT
CATTGTTCTTATATTTTTCTAAAATTTTGATATGGTACACTGAAGAAAGA
ACACTCAGCCAAACTCAACAACAGGTAGGTTTAAATGCAAATTTTAGGTA
CAGATCCTGGTGTCTATTGAAGGTAATTTGAAGGTTTCTTTGTTTTAATT
TTAAGATTTATTTTTATTTGCTTGTGTATGTGTGTGTATTGCTGTTGTGA
ATGTTTGTGAGTATATTCATGCCCAGTAGCCATGGAGGCCAGAAGAGGGT
ATTGAATCCCTGGGAAACAGAGTGAGAGGCACAAGCAAGCCACTATGTGT
ATTCTGGGAATTAAACCTTAGTACTCTGCAAAAGCAATAAATTCTCTTAA
ATGTAGAGCCATTTCTCGGACTCCATGTCTGACCTCTTCTGCACCCTTTA
TTATTAAAGAAGGCCACAGTACTCACCCTTTGGAAAAGTCAAACTTGAAA
AGAATAGTAGCAGGTGAGCATAGTGGACACAGGCCTTGTAACACCAACAC
ACAGAGGCTGAAGCAATGAACTCCTGACCATCCTGGGTGTAGTGAGAGCT
GTATTCAGAAGACATGAATGATCAGGAGAGCCATGGTCTTCTACTCAACA
CCCATGCAAGGGTTCCAATGTTATTTCTGCAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGATTCATCATATAATCTCTT
TGCCTATTCAAAATACAATCTCCTTGTCTATACCAAAATAACCCAATTTA
AAAGTAGAGTTATTCTCTCCCCCGAAAAGTGTCCACAGATTACTCTTAAA
TCAATGGTGGAAAAGCATCCCTCTCAGGGTGTGGGCCTCTCTATATAAAT
CATCTTTTCTTTGGTACTCTAGCCACATTTTTCACACATCAGTTTCTATC
TTTTTAGAGAAACCACAATGTTCTATTTGACTTACCCTGTTCTACTGGCA
GAATTTGGGGTAGAATAGGTTACCTTTCATTCACTTTACACTTCCCAGGA
ACCAGTTCTCTATGTCTGTTGATCAATTAGTGAAGATAAATTTTTTGTGT
GTAATGTGAGGTTTTCTGGTTAATTTAGAACGATAGACACAAACTCTAGT
AATACATTACAGCCCAATCTGAAGTTTCACATTTTTTTTCTGATAGTGGT
CTTAGGCAAAGTTATTCACCACTACGGTGTTCAGTTTCTACTTTTATAAA
TGTGATAATAACCAGAAAGTCCCAGGTGTCAGGAAAGCAAGAGGCTCCCA
GGACCCAATGGATGAGATTAGCTGAAATGCTCAACAAAGAGGAGGGAGAA
CCTGTAGAGACCATATCCAGAAGTTAGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_l01.b1 MSMg01no325_l01.b1 CHROMAT_FILE:
MSMg01no325_l01.b1 PHD_FILE: MSMg01no325_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:14 2005
         (688 letters)



>mm_chr1_171102557_171103644
          Length = 1088

 Score =  919 bits (475), Expect = 0.0
 Identities = 475/475 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcgacagaggaatatcaaacggcaaagaagcacttaaagaaactttcattgttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattctcgacagaggaatatcaaacggcaaagaagcacttaaagaaactttcattgttc 416

                                                                       
Query: 65  ttatatttttctaaaattttgatatggtacactgaagaaagaacactcagccaaactcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttatatttttctaaaattttgatatggtacactgaagaaagaacactcagccaaactcaa 356

                                                                       
Query: 125 caacaggtaggtttaaatgcaaattttaggtacagatcctggtgtctattgaaggtaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caacaggtaggtttaaatgcaaattttaggtacagatcctggtgtctattgaaggtaatt 296

                                                                       
Query: 185 tgaaggtttctttgttttaattttaagatttatttttatttgcttgtgtatgtgtgtgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tgaaggtttctttgttttaattttaagatttatttttatttgcttgtgtatgtgtgtgta 236

                                                                       
Query: 245 ttgctgttgtgaatgtttgtgagtatattcatgcccagtagccatggaggccagaagagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ttgctgttgtgaatgtttgtgagtatattcatgcccagtagccatggaggccagaagagg 176

                                                                       
Query: 305 gtattgaatccctgggaaacagagtgagaggcacaagcaagccactatgtgtattctggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gtattgaatccctgggaaacagagtgagaggcacaagcaagccactatgtgtattctggg 116

                                                                       
Query: 365 aattaaaccttagtactctgcaaaagcaataaattctcttaaatgtagagccatttctcg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 aattaaaccttagtactctgcaaaagcaataaattctcttaaatgtagagccatttctcg 56

                                                                  
Query: 425 gactccatgtctgacctcttctgcaccctttattattaaagaaggccacagtact 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  gactccatgtctgacctcttctgcaccctttattattaaagaaggccacagtact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_l01.g1 MSMg01no325_l01.g1 CHROMAT_FILE:
MSMg01no325_l01.g1 PHD_FILE: MSMg01no325_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:14 2005
         (654 letters)



>mm_chr1_171080629_171081682
          Length = 1054

 Score = 1265 bits (654), Expect = 0.0
 Identities = 654/654 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagattcatcatataatctctttgcctattcaaaatacaatctccttgtctataccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagattcatcatataatctctttgcctattcaaaatacaatctccttgtctataccaa 260

                                                                       
Query: 61  aataacccaatttaaaagtagagttattctctcccccgaaaagtgtccacagattactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataacccaatttaaaagtagagttattctctcccccgaaaagtgtccacagattactct 320

                                                                       
Query: 121 taaatcaatggtggaaaagcatccctctcagggtgtgggcctctctatataaatcatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatcaatggtggaaaagcatccctctcagggtgtgggcctctctatataaatcatctt 380

                                                                       
Query: 181 ttctttggtactctagccacatttttcacacatcagtttctatctttttagagaaaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctttggtactctagccacatttttcacacatcagtttctatctttttagagaaaccac 440

                                                                       
Query: 241 aatgttctatttgacttaccctgttctactggcagaatttggggtagaataggttacctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgttctatttgacttaccctgttctactggcagaatttggggtagaataggttacctt 500

                                                                       
Query: 301 tcattcactttacacttcccaggaaccagttctctatgtctgttgatcaattagtgaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcattcactttacacttcccaggaaccagttctctatgtctgttgatcaattagtgaaga 560

                                                                       
Query: 361 taaattttttgtgtgtaatgtgaggttttctggttaatttagaacgatagacacaaactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaattttttgtgtgtaatgtgaggttttctggttaatttagaacgatagacacaaactc 620

                                                                       
Query: 421 tagtaatacattacagcccaatctgaagtttcacattttttttctgatagtggtcttagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtaatacattacagcccaatctgaagtttcacattttttttctgatagtggtcttagg 680

                                                                       
Query: 481 caaagttattcaccactacggtgttcagtttctacttttataaatgtgataataaccaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaagttattcaccactacggtgttcagtttctacttttataaatgtgataataaccaga 740

                                                                       
Query: 541 aagtcccaggtgtcaggaaagcaagaggctcccaggacccaatggatgagattagctgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagtcccaggtgtcaggaaagcaagaggctcccaggacccaatggatgagattagctgaa 800

                                                                 
Query: 601 atgctcaacaaagaggagggagaacctgtagagaccatatccagaagttaggca 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgctcaacaaagaggagggagaacctgtagagaccatatccagaagttaggca 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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