BAC Information

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BAC

Clone NameMSMg01-325O09
Chromosome1 (Build37)
Map Location 66,792,931 - 66,952,408
singlet/doubletdoublet
Overlap gene1110028C15Rik, Acadl
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe
Downstream geneMyl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325O09.T7 (MSMg01no325_o09.b1)MSMg01-325O09.TJ (MSMg01no325_o09.g1)
ACCAG443666AG443667
length737736
length of high quality
(start - end)		641 (45 - 685)648 (72 - 719)
definitionCHROMAT_FILE: MSMg01no325_o09.b1 PHD_FILE: MSMg01no325_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:29 2005CHROMAT_FILE: MSMg01no325_o09.g1 PHD_FILE: MSMg01no325_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,951,772 - 66,952,408)(66,792,931 - 66,793,578)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGA
ATTCCATGTTTCTCCTTGTGGCTTCAGAACACCAATGCAGGGCTTGGTGA
AACCAAGACGCCGGTAGCAATCCTCTGCTTTCTAGACAAGTGTGTGTTGA
GAAATGGAGAAGTTGTCGGGCCCTTATGTGCACTGGTCCATTTACATTGA
GGTGGTGACACAGTACTTGAAAGTGTATCTGCGATCAAGAAACTAATGTC
TCCTTCGTGCTTTCAAAGAAGCCTGGATGTTTAAAAGCTAGTCCTGCAAG
TACTCCTTAGGCCACATGATTAAGAACACAACTACATGGAAAGAAACTGT
GCCTTCCCCCTCCTAAGTACAAGAGAGTAAAGTTTTGCCTCAAGAGGATA
TACAAAGGATACTATCTACCAACCTGAGTCCAGGTGGCATCTGGAGGTGC
TCAAAGGCCCAAACAGAGAAGAGCTCTGTAGCATGTACTTGGAAGGCCAG
ATATAAGGCTCAGAAATAAGTCAGAAGTTCTGGTCCATTAGCATCAAATG
GATACCCTCCACAGACCGAGGGAACCCAAACTCTAACATCCCATGACAGA
CAATGAAAGCAAGGCTGTTTGTTTGTTTGTTTGTTTGTTTTAAATTCTCT
TTCTACCCCATCCCCAAGACCTGACCATCAAAGGTCAGAGAAAGTAGCTC
TGGTGTCATGGAAAGACTGAGCCCAGTTCTTACTATA

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTTACCACGATTACTTATTATCTAAAGA
AGATATTCTTTATGGGGTAAAGTAGATATGACTCCCAGGTGAGGAAGAGC
TGGTTTCTCAGTAGTAGACTGCTATTACTTAAATACTAGTTGTCACCTCC
TTTTCTTCATTTAATTGGACACCTCAGACACTCCAATTCCCCTGTTTCCT
ATATCATTGTAACTCATTATGTCTCCTACAGACTATTTATTCTCTCTTCC
CTCAAGGTACAGGAGAGTAGCTGAGATACTTCTGTTGAAATGTAATTTGT
CTATGTGCCTGATTTTTCCAACATGAATTTAAATCTATATAAAATCAAAT
TAACTTTGAAATTTTTCCAATTTTTGTTTGTTTGTTTGTTTGTTTTTTGT
TTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT
TTGTAGACTAGGCTGACCTCGAACTCAGAAATCCACCTGCCTCTGCCTCC
CAAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGCCTGAAATTTTT
CTAATTTTTTAACCAAAGGATGAACATACCTATAATTATTTAGATGTTAT
CCAAAAATATTTTACTTAAGTATTTTTAATTAAAAATGAAGTGCCCATTA
ATCATATAAACAAAGTCTGTAAATCCAATTATCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_o09.b1 MSMg01no325_o09.b1 CHROMAT_FILE:
MSMg01no325_o09.b1 PHD_FILE: MSMg01no325_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:29 2005
         (641 letters)



>mm_chr1_66951639_66952679
          Length = 1041

 Score = 1162 bits (601), Expect = 0.0
 Identities = 628/637 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgtttctccttgtggcttcagaacaccaatgcagggcttggtgaaaccaaga 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gaattccatgtttcagattgtggcttcagaacaccaatgcagggcttggtgaaaccaaga 711

                                                                       
Query: 65  cgccggtagcaatcctctgctttctagacaagtgtgtgttgagaaatggagaagttgtcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cgccggtagcaatcctctgctttctagacaagtgtgtgttgagaaatggagaagttgtcg 651

                                                                       
Query: 125 ggcccttatgtgcactggtccatttacattgaggtggtgacacagtacttgaaagtgtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ggcccttatgtgcactggtccatttacattgaggtggtgacacagtacttgaaagtgtat 591

                                                                       
Query: 185 ctgcgatcaagaaactaatgtctccttcgtgctttcaaagaagcctggatgtttaaaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctgcgatcaagaaactaatgtctccttcgtgctttcaaagaagcctggatgtttaaaagc 531

                                                                       
Query: 245 tagtcctgcaagtactccttaggccacatgattaagaacacaactacatggaaagaaact 304
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 530 tagtcctgcaagtactccttaggccacatgaggaagaacacaactacatggaaagaaact 471

                                                                       
Query: 305 gtgccttccccctcctaagtacaagagagtaaagttttgcctcaagaggatatacaaagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtgccttccccctcctaagtacaagagagtaaagttttgcctcaagaggatatacaaagg 411

                                                                       
Query: 365 atactatctaccaacctgagtccaggtggcatctggaggtgctcaaaggcccaaacagag 424
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atactatctatgaatctgagtccaggtggcatctggaggtgctcaaaggcccaaacagag 351

                                                                       
Query: 425 aagagctctgtagcatgtacttggaaggccagatataaggctcagaaataagtcagaagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aagagctctgtagcatgtacttggaaggccagatataaggctcagaaataagtcagaagt 291

                                                                       
Query: 485 tctggtccattagcatcaaatggataccctccacagaccgagggaacccaaactctaaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tctggtccattagcatcaaatggataccctccacagaccgagggaacccaaactctaaca 231

                                                                       
Query: 545 tcccatgacagacaatgaaagcaaggctgtttgtttgtttgtttgtttgttttaaattct 604
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 230 tcccatgacagacaatgaaagcaaggttgtttgtttgtttgtttgtttgttttaaattct 171

                                                
Query: 605 ctttctaccccatccccaagacctgaccatcaaaggt 641
           |||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctttctaccccatccccaagacctgaccatcaaaggt 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_o09.g1 MSMg01no325_o09.g1 CHROMAT_FILE:
MSMg01no325_o09.g1 PHD_FILE: MSMg01no325_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:29 2005
         (648 letters)



>mm_chr1_66792731_66793778
          Length = 1048

 Score = 1245 bits (644), Expect = 0.0
 Identities = 647/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttaccacgattacttattatctaaagaagatattctttatggggtaaagtagatatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttaccacgattacttattatctaaagaagatattctttatggggtaaagtagatatga 260

                                                                       
Query: 61  ctcccaggtgaggaagagctggtttctcagtagtagactgctattacttaaatactagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcccaggtgaggaagagctggtttctcagtagtagactgctattacttaaatactagtt 320

                                                                       
Query: 121 gtcacctccttttcttcatttaattggacacctcagacactccaattcccctgtttccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcacctccttttcttcatttaattggacacctcagacactccaattcccctgtttccta 380

                                                                       
Query: 181 tatcattgtaactcattatgtctcctacagactatttattctctcttccctcaaggtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcattgtaactcattatgtctcctacagactatttattctctcttccctcaaggtaca 440

                                                                       
Query: 241 ggagagtagctgagatacttctgttgaaatgtaatttgtctatgtgcctgatttttccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagagtagctgagatacttctgttgaaatgtaatttgtctatgtgcctgatttttccaa 500

                                                                       
Query: 301 catgaatttaaatctatataaaatcaaattaactttgaaatttttccaatttttgtttgt 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 catgaatttaaatctatataaaatcaaattaactttgaaatttttctaatttttgtttgt 560

                                                                       
Query: 361 ttgtttgtttgttttttgtttttccagacagggtttctctgtgtagccctggctgtcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtttgtttgttttttgtttttccagacagggtttctctgtgtagccctggctgtcctg 620

                                                                       
Query: 421 gaactcactttgtagactaggctgacctcgaactcagaaatccacctgcctctgcctccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaactcactttgtagactaggctgacctcgaactcagaaatccacctgcctctgcctccc 680

                                                                       
Query: 481 aagtgctgggattaaaggcgtgcgccaccacacccggcctgaaatttttctaatttttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtgctgggattaaaggcgtgcgccaccacacccggcctgaaatttttctaatttttta 740

                                                                       
Query: 541 accaaaggatgaacatacctataattatttagatgttatccaaaaatattttacttaagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accaaaggatgaacatacctataattatttagatgttatccaaaaatattttacttaagt 800

                                                           
Query: 601 atttttaattaaaaatgaagtgcccattaatcatataaacaaagtctg 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttttaattaaaaatgaagtgcccattaatcatataaacaaagtctg 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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