Query= MSMg01no325_p12.b1 MSMg01no325_p12.b1 CHROMAT_FILE:
MSMg01no325_p12.b1 PHD_FILE: MSMg01no325_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:35 2005
(504 letters)
>mm_chr1_14999223_15000126
Length = 904
Score = 899 bits (465), Expect = 0.0
Identities = 491/505 (97%), Gaps = 10/505 (1%)
Strand = Plus / Plus
Query: 5 gaattcctggaccaacacaaacatctgaatttctaacggtcccagtgtgctagccctcct 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggaccaacaaaaacatctgaatttctaacggtcccagtgtgctagccctcct 264
Query: 65 gtaggaagatgggtgcagacatcttggtattcaacttaaacactcctaaggagaagcaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaggaagatgggtgcagacatcttggtattcaacttaaacactcctaaggagaagcaca 324
Query: 125 ttttctttggctgataaactcctccctttcgtgatgtttctcttagtaagcccttattag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttctttggctgataaactcctccctttcgtgatgtttctcttagtaagcccttattag 384
Query: 185 gaagagtggaagaaggctgtcagcatttggtctttattttcttactagcctacctgatct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagagtggaagaaggctgtcagcatttggtctttattttcttactagcctacctgatct 444
Query: 245 gcagttcctgaccttctatgccttaaaagaggcacagagagacacactacttctatttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagttcctgaccttctatgccttaaaagaggcacagagagacacactacttctatttca 504
Query: 305 caaagaaggaagcagacttaattcagtagcatctcaaagaccacacagctagaaaagagt 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaagaaggaagcagacttaattcagtagcatctcaaagaccacacagctagaaaagagt 564
Query: 365 cagtgctccccgcc-----gaatcatactgatgtgatttcaaagctgtcagctaggcttg 419
||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 cagtgctcc-----tgtttgaatcatactgatgtgctttcaaagctgtcagctaggcttg 619
Query: 420 gtaaatttaacaaatgggaagagagtagaacagtgagataattctatctaaataagaata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtaaatttaacaaatgggaagagagtagaacagtgagataattctatctaaataagaata 679
Query: 480 tgtatcacatcagcacactttaaaa 504
||||||||||||||| |||||||||
Sbjct: 680 tgtatcacatcagcaaactttaaaa 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_p12.g1 MSMg01no325_p12.g1 CHROMAT_FILE:
MSMg01no325_p12.g1 PHD_FILE: MSMg01no325_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:35 2005
(632 letters)
>mm_chr1_15160444_15161475
Length = 1032
Score = 1160 bits (600), Expect = 0.0
Identities = 624/632 (98%)
Strand = Plus / Minus
Query: 1 caggctgaaataattattacctagaactttgaagatgttgacttgaaagtttaaagtttc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 832 caggctgaaataattattacctagaactttgaagatgttgacttgaaagtctaaagtttc 773
Query: 61 ttttttcatttttcttgaacactcctaggaatacgttgacatgctttccaaaggtaagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ttttttcatttttcttgaacactcctaggaatacgttgacatgctttccaaaggtaagtc 713
Query: 121 atacttcccgaagatccaaaagaattaaagatggcattatatattcacagccaaagatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 atacttcccgaagatccaaaagaattaaagatggcattatatattcacagccaaagatga 653
Query: 181 agcttcagtttcatagataatagatctgttaagaaatctgcagaataacaatttattccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agcttcagtttcatagataatagatctgttaagaaatctgcagaataacaatttattccc 593
Query: 241 atgaatgttatacctctacaagtagttggacattcatgttgaatcaaggacctgactctg 300
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 592 atgaatgttagacctctacaagtaattggacattcatgttgaatcaaggacctgactctg 533
Query: 301 atatggagatttatttttatagcaagaaataatttaaaaacatcaacgccctgcctccta 360
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 532 atatggagatttatttttatagcaagaaataatttaaaaacatcaaggttctgcctccta 473
Query: 361 atcaagcaccatacatcctaatattaaatatggcagagaaaaatcattaaattaattatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atcaagcaccatacatcctaatattaaatatggcagagaaaaatcattaaattaattatt 413
Query: 421 aactgtaaagacaaaaaagtactgttgggactggttttgtcaaaaagagactgttcaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aactgtaaagacaaaaaagtactgttgggactggttttgtcaaaaagagactgttcaata 353
Query: 481 tcttctgatattagaattttaattaaaagtgatgggtgtttcgatttttcatttccttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tcttctgatattagaattttaattaaaagtgatgggtgtttcgatttttcatttccttca 293
Query: 541 tttaaataagacttccaagcctgaaggcttaaatacaagccagaaataattaatatatat 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 292 tttaaacaagacttccaagcctgaaggcttaaatacaagccagaaataattaaaatatat 233
Query: 601 aatgagagttatactttgagtaaactttttta 632
||||||||||||||||||||||||||||||||
Sbjct: 232 aatgagagttatactttgagtaaactttttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
