BAC Information

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BAC

Clone NameMSMg01-326I09
Chromosome1 (Build37)
Map Location 90,147,794 - 90,148,153
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326I09.T7 (MSMg01no326_i09.b1)MSMg01-326I09.TJ (MSMg01no326_i09.g1)
ACCAG444125AG444126
length746749
length of high quality
(start - end)		371 (45 - 415)342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no326_i09.b1 PHD_FILE: MSMg01no326_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:15 2005CHROMAT_FILE: MSMg01no326_i09.g1 PHD_FILE: MSMg01no326_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTCTTGCTCCGATCCTAGGTGGTTTGCCCAGAGTTTAACTTCGAC
GAGGTTGTCTCTCTCATCCAGAAGCTCTGTGAGAACATTGGGGCCATGGA
CCTGCAGCATGACAGGGCTGCTGTTACCTGGATAGGCATCTTCCTCCAGA
TGCGGGTCAAGGAGCTGGAGGACAAGGTAACCAAGCTCAGCAGGGGATGC
TTGGATTGGTACTGGGACTGACCTGTGTAGCACACACGGAGAATGACCAC
TTCCACCCAAACTAGGAGTGCTAAAGGGGATAAAACAGAGTTCTAGAATG
AGAAATCTGTTGAGATGTAACTAGTCAGTGAGTAGATGAGGGACTACTGG
TGCCAGGCTCTTCCCCCCCATCACAGTGAAGACACACTGAACATGTAGGA
GGAAAAGACCCATAGGGCTTCCAGAGAGGGCTTTTGGGAGTGGGGTGTCT
AACCAACACACCATGTTTCCCAAGATAGGAGTATCCTTCAGGGGCCCAGA
AATACCTTTATTTCTGTCTCTGTCATAAAGTACACTGACCAAACACAATT
TAGCAAAGTCAATGGCCAAACAGGTTATAGCTCATCACTGAGGGACATTA
AGTACCTAGTGAAATTATATCCACAGTTAAGAGCAGTGTGGTGTTGCACA
CCTTTAATCTCAGCACTCGGGAGGCAAAGGTAGGTGGATTTCTGAG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTACAGATATAATTAAGGAGAATATC
ATGATTTTATAAACTCAAATGAATGAGACTCATCAATTCAGATTCCCAGT
AACAATTGTATTCTGAGAGTGTAAATATTAGAGACATATTTGGCAAAATA
TCAGGGTTCCTGTTGATTTCATATATGGAAAAGCCAAAGCCAGAGCATAC
TTGTGATTTTCAGTATGAGTTCTGTAAAAGTTTATAGTGTTTAAAATTAG
CAGCAATTTACAGATAACATTTGGAGTCAATAAAAGGACAATTCTCTACT
GTATTGCATTGTCCACACCCCATAAAGATAAAAAAGATATGTGTAATGTG
GTTGACATGGCAGACACCCTGCAAGTTCATTAAACCTTGAAATGTTCATG
AAATATTATCTCTCAAAAATGAGATGTTACCACTATTAGTAATACCATCA
CTTTTCAAAAAACACAAACAGATCCCTTTTAGTCCATATATTGCGTCCTT
ATTCTAAAGAGAGAGTAAAGAACTGTACTTTGTAAGTTGTTAATTCCAGT
TAATTTGTATTGATCAAAATATAAACTTCACAGTGGACAGCTATCTTAGT
TCAATTATTGATGCAGCATCTGTACATAAACAGGGACCAAATTGAGGATA
TTTAAGATAGTGGCTGAATATGCACAGGTAGGTATGTCTCCAATATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_i09.b1 MSMg01no326_i09.b1 CHROMAT_FILE:
MSMg01no326_i09.b1 PHD_FILE: MSMg01no326_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:15 2005
         (371 letters)



>mm_chr1_90147591_90148356
          Length = 766

 Score =  613 bits (317), Expect = e-180
 Identities = 351/365 (96%), Gaps = 5/365 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtcttgctccgatcctaggtggtttgcccagagtttaacttcgacgaggttg 63
           |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattctgttttgctctgatcctaggtggtttgcccagagtttaactgcgacgaggttg 263

                                                                       
Query: 64  tctctctcatccagaagctctgtgagaacattggggccatggacctgcagcatgacaggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctctctcatccagaagctctgtgagaacattggggccatggacctgcagcatgacaggg 323

                                                                       
Query: 124 ctgctgttacctggataggcatcttcctccagatgcgggtcaaggagctggaggacaagg 183
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgctgtcacctggataggcatcttcctccagatgcgggtcaaggagctggaggacaagg 383

                                                                       
Query: 184 taaccaagctcagcaggggatgcttggattggtactgggactgacctgtgtagcacacac 243
           |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||
Sbjct: 384 taaccaagctcagcaggggatgcttgg-----tactgggactgacctgtgtagcacacac 438

                                                                       
Query: 244 ggagaatgaccacttccacccaaactaggagtgctaaaggggataaaacagagttctaga 303
           ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 439 ggagactgaccacttccatccaaaccaggagtgctaaaggggataaaacagagttctaga 498

                                                                       
Query: 304 atgagaaatctgttgagatgtaactagtcagtgagtagatgagggactactggtgccagg 363
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 499 atgagaaagctgttgagatgtaactagtcagtgagtagatgagggaccactggtgccagg 558

                
Query: 364 ctctt 368
           |||||
Sbjct: 559 ctctt 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 766
Length adjustment: 9
Effective length of query: 362
Effective length of database: 757
Effective search space:   274034
Effective search space used:   274034
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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