BAC Information

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BAC

Clone NameMSMg01-327I05
Chromosome1 (Build37)
Map Location 87,501,881 - 87,502,523
singlet/doubletsinglet
Overlap geneSp140
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110
Downstream geneSp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327I05.T7 (MSMg01no327_i05.b1)MSMg01-327I05.TJ (MSMg01no327_i05.g1)
ACCAG444852AG444853
length790748
length of high quality
(start - end)
360 (46 - 405)646 (75 - 720)
definitionCHROMAT_FILE: MSMg01no327_i05.b1 PHD_FILE: MSMg01no327_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:26 2005CHROMAT_FILE: MSMg01no327_i05.g1 PHD_FILE: MSMg01no327_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTCCCAGCACCACATGGTGACTCCCAACTACCTGTAATGGGAT
CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTACTCATATA
CATAAAATAAATAATTCTTTTTTAAAAAGAAAAAGGAAAAAAAGCTAGTG
GCCTATAGCAAAGGCAGAAAGTAGAAGGAAGAACTTCTGGGAAGAGATAA
GAACTCTGGGAGAGAGACAACCGGCCACCTTCCTGGTGAGAGCACAGGGG
TCCGCCCAGCCCGAGAGGTTTCTGCCTCAGGCTTCAGCGGGAGCCACCTT
GGCTCGGGACTCCGAGGAGGGCAGGTTGCACGGGTGATGGTGTGTAATAC
AGAGGCTAGTATTTTCCCCCACACNCGAGAGCCACAGAGCTTCTGATGCG
CTGCCATCTTCGGCTCCAGACAACCGGCCACCTTCCTAGCGAGAGCCAGA
GAGCTTCTGAGGTGGCGACATCTTCAGCTCCAGATCACTGGCCATCTTTC
TGTTTATAAGCCACGCGTCCACCCCGCTCCTAGACGCCCACCGCCTCTAT
GATTCTTTACTAAATCAATTTTGCACTCCCTAATTCCGGCATAAAAATAG
TTTCTCCTTTATCTCACTTTCTTTTCATCTCTCCCGCTCTCTATACTTTC
TCGTCCATTGTCCCTTATACCTCCCATATACCTATTTCCCTCCACTATTC
CCATATTTCTCATCGTTCCCCGCCCCGCCCCCTTAACCCN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGCTTGTGTCTGTCTTACCTTCGC
TAGCCTGAGTAGAGATTTAATAATGTATTGATCTTTCCAAAGGATGTGAG
CATAATGCCCACTTCTTTTAATTCTATGGATTTCTACTTTAATTTCATTG
AATCTTTGTCTTCATTGGGATGAAATCATTCCTCATAAGATTGTTCATTT
ATGCCTCTCTTAGCTTCCGACACATACAAAGCTGTATGTTTCCCCTTAGC
CACTGCCTTTGCTGTGTCTCAGATTTAATAATTTTTAGACTTCAGTGCTT
TTTTAGTGTAGGAGAAAGGGTCACACTTTTGCTTGTCTTACCCCATGTAA
AAAAAATTACATTCATTTATTTATTGTATGTGTGCAGGTGCCACAATGTG
TCTTTTGAGATCAGAGGACAACTTTGGGGAGTTGGTTCTCTCCTACTACC
GTGCAGTTAGTTCCTAGGGGAGCAATCTCATGTCCGCAGACTTGGGGGCA
AGGCCTGTATCAGCTGAGCCATCCTCCCAGACCCTCTTTTATTTACATTA
GTTACAGTTTTTAAACGTACTCTGTTTTATAATTGTGCTATTATTACATT
ATCCACATTTTGACTCTTTATGGACACAGAGAAATACCTACCATGTTTGT
AAATATTTTAATTTTACACTTTTTTTTGGCTTTCCTTTCTTTTTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_i05.g1 MSMg01no327_i05.g1 CHROMAT_FILE:
MSMg01no327_i05.g1 PHD_FILE: MSMg01no327_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:26 2005
         (646 letters)



>mm_chr1_87501681_87502726
          Length = 1046

 Score = 1151 bits (595), Expect = 0.0
 Identities = 631/643 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagcttgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattgatct 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagcgtgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattgatct 260

                                                                       
Query: 61  ttccaaaggatgtgagcataatgcccacttcttttaattctatggatttctactttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccaaaggatgtgagcataatgcccacttcttttaattctatggatttctactttaatt 320

                                                                       
Query: 121 tcattgaatctttgtcttcattgggatgaaatcattcctcataagattgttcatttatgc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tcattgaatctttgtcttcattgggatgaaatcactcctcataagattgttcatttatgc 380

                                                                       
Query: 181 ctctcttagcttccgacacatacaaagctgtatgtttccccttagccactgcctttgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcttagcttccgacacatacaaagctgtatgtttccccttagccactgcctttgctg 440

                                                                       
Query: 241 tgtctcagatttaataatttttagacttcagtgcttttttagtgtaggagaaagggtcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtctcagatttaataatttttagacttcagtgcttttttagtgtaggagaaagggtcac 500

                                                                       
Query: 301 acttttgcttgtcttaccccatgtaaaaaaaattacattcatttatttattgtatgtgtg 360
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttttgcttgtcttaccccatttaaaaaaaattacattcatttatttattgtatgtgtg 560

                                                                       
Query: 361 caggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggttctctcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggttctctcct 620

                                                                       
Query: 421 actaccgtgcagttagttcctaggggagcaatctcatgtccgcagacttgggggcaaggc 480
           |||||| || ||||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 621 actaccatgtagttagttcttaggggagcaagctcatgtccgcagacttggtggcaaggc 680

                                                                       
Query: 481 ctgtatcagctgagccatcctcccagaccctcttttatttacattagttacagtttttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtatcagctgagccatcctcccagaccctcttttatttacattagttacagtttttaa 740

                                                                       
Query: 541 acgtactctgttttataattgtgctattattacattatccacattttgactctttatgga 600
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 741 acgtactctgttttataattgtgctattattaaattatccacattttgactcattatgga 800

                                                      
Query: 601 cacagagaaatacctaccatgtttgtaaatattttaattttac 643
           ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 801 cacagagaaatacctaccatgtttgtaaatattttcattttac 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)