BAC Information

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BAC

Clone NameMSMg01-327I12
Chromosome1 (Build37)
Map Location 109,369,844 - 109,370,190
singlet/doubletsinglet
Overlap genenone
Upstream geneBcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7
Downstream geneSerpinb2, Serpinb10, Serpinb8, LOC435640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327I12.T7 (MSMg01no327_i12.b1)MSMg01-327I12.TJ (MSMg01no327_i12.g1)
ACCAG444866AG444867
length728724
length of high quality
(start - end)
375 (44 - 418)349 (76 - 424)
definitionCHROMAT_FILE: MSMg01no327_i12.b1 PHD_FILE: MSMg01no327_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:27 2005CHROMAT_FILE: MSMg01no327_i12.g1 PHD_FILE: MSMg01no327_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAGATCCGCGGA
ATTCAGCACAGCTTCCACTGTTGGCTTATTCAAACATTAACAGAAAGAAC
ACAGGGCATCAGGACTTTGTTCCTGTGGGCTGGGGGCTTATCTTTGTTCA
CATAGCAACCAGTTGATGTATGACTTTACCCGGCACCAAGGGGCAATAGA
CATAAGGGAGGTTCTGGCCAGATGGTGTTGACTTAGATAATATAGCCCTG
CTGGTCCTTGCATACCTTTTTATCTTTACAGTCAAGATGTTCTTAGGAAT
GCCTTAACAACAGCCCTGGCTTGGCATGCCTGGGGGCTGTTCTGCTTTGT
TCTCAGTCCCAGGCCGGGGCCGCGGGCTCCTAAACTCACAAGTTACAATA
TTTTATTTTCCTTCATAACCCCCCCACCTATGGGCATAGTGTAGCCTGTG
CACAGAGAGGTTCTCAGTGTAACCTGCGCACAGACAATGGGGACAACGTA
ACCTGCGAATATACAGGGGATCAGTGCAATCCACACTAAGCGTAATATTT
CTACAGAACTTCATCTTGTCTGCCCGTACGAAGGTGATACGCACCTTCTG
CTGCCCAAATGTATATTATTGCTGTCATTGTGTCTAACTTTATTGCATTC
CTCCATCTTCTATCCCACCCGTATTCCCTCCTGATCCTTCACCTCCTTCT
TGATTTACCACCCTGAATTCTTGTCTCA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCACCAAGAGATCTGGCAGCCCCT
TCTGGCCCTCACAAGTACTATATGCAGGCACACCACATACACATAGGTGA
TAGAAATTAAAATAAATTCACTTTGCAGTGTAAATGATGTACAAGATTTA
GCATTCAAAATGTAAATGTTGGTAAATAGTAATATTTGTTAAGTAAAAAA
AATAAATTTTGAAACCAATCGTGCAAAAATATGAAAATATGCTATTATTT
CTCTTTATGGTGCTTGTACATCTCTAGGTAGTCTCCATATATTTTAGAAT
TTTAAAATATAGAACTTTTATTTCAAATGAATATATCTGTCTTTATGCTA
TCTACTAGAATCTATTGTTGCCCCCCCGCCCGCTGTTTAAAAAAAAAACT
CAATTTTTTAGGGATAATTATAATCTTATTGAAAATTATAATTTCTCTTT
TTTTACTTTTTCAATTGTTTTGGGGCTAAGTTCTTTTGTGTCTCACACAG
ACACATTCCTATTTCTCTTCTTTCTACCCTCCCTACCATCTTCCATCTCA
CTCTTTCTCTCATTCATGTCTCCCAGCCTCTGTTTATCTCTTTCCCTCAC
TTGGAACTTTCCTTTTCCTTATTAGACCTTTATAACGCTATCTACAATGG
TATTCTTCGCATGTTAGAAAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_i12.g1 MSMg01no327_i12.g1 CHROMAT_FILE:
MSMg01no327_i12.g1 PHD_FILE: MSMg01no327_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:27 2005
         (349 letters)



>mm_chr1_109369644_109370394
          Length = 751

 Score =  571 bits (295), Expect = e-167
 Identities = 334/347 (96%), Gaps = 2/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaccaagagatctggcagccccttctggccctcacaagtactatatgcaggcacacca 60
           |||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 547 agcaccaacagatctggcagccccttctggccctcacaagaactatatgcagacacacca 488

                                                                       
Query: 61  catacacataggtgatagaaattaaaataaattcactttgcagtgtaaatgatgtacaag 120
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 487 gatacacataggtgatagaaataaaaataaattcactttgcagtgtaaatgatgtacaag 428

                                                                       
Query: 121 atttagcattcaaaatgtaaatgttggtaaatagtaatatttgttaagtaaaaa-aaata 179
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 427 atttagcattcaaaatgtaaatgttggtaaatagtaatatttcttaagtaaaaagaaata 368

                                                                       
Query: 180 aattttgaaaccaatcgtgcaaaaa-tatgaaaatatgctattatttctctttatggtgc 238
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 367 aattttgaaaccaatcgtgcaaaaaatatgaaaatatgctattatttctttttatggtgc 308

                                                                       
Query: 239 ttgtacatctctaggtagtctccatatattttagaattttaaaatatagaacttttattt 298
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 307 ttgtacatctctatgtagtctccatatattttagaattttaaaatatataacttttattt 248

                                                          
Query: 299 caaatgaatatatctgtctttatgctatctactagaatctattgttg 345
            ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 247 gaaatgaatatatctgtctttatgctatctcctagaatctattgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 751
Length adjustment: 9
Effective length of query: 340
Effective length of database: 742
Effective search space:   252280
Effective search space used:   252280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)