Query= MSMg01no327_m21.b1 MSMg01no327_m21.b1 CHROMAT_FILE:
MSMg01no327_m21.b1 PHD_FILE: MSMg01no327_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:47 2005
(323 letters)
>mm_chr1_142456093_142456814
Length = 722
Score = 594 bits (307), Expect = e-174
Identities = 316/319 (99%), Gaps = 1/319 (0%)
Strand = Plus / Plus
Query: 5 gaattctgaataagacatgactgttaaaactgtgtattcaattactttaaataatattaa 64
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaataagaaatgactgttaaaa-tgtgtattcaattactttaaataatattaa 263
Query: 65 tattgtagaatgtattatatagatggtactatgtgaagtatatggtatatatgaagatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattgtagaatgtattatatagatggtactatgtgaagtatatggtatatatgaagatat 323
Query: 125 gtatgtatgttcaaattatgggtattgatggtcataaattcatgtcttagtttgtgtttc 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 gtatgtatgttcaaattatgggtattgatggtcataaattaatgtcttagtttgtgtttc 383
Query: 185 cattgctgtgatgagacaccatatccaagtcaactcttataatggaaaacatttaattgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cattgctgtgatgagacaccatatccaagtcaactcttataatggaaaacatttaattgg 443
Query: 245 ggctggcctacacgttctgaggttcagtccattatcaccatcatgctggaggggctaaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggctggcctacacgttctgaggttcagtccattatcaccatcatgctggaggggctaaga 503
Query: 305 gttctacatcttgttccaa 323
|||||||||||||||||||
Sbjct: 504 gttctacatcttgttccaa 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space: 223882
Effective search space used: 223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no327_m21.g1 MSMg01no327_m21.g1 CHROMAT_FILE:
MSMg01no327_m21.g1 PHD_FILE: MSMg01no327_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:47 2005
(602 letters)
>mm_chr1_142512213_142513212
Length = 1000
Score = 1120 bits (579), Expect = 0.0
Identities = 598/608 (98%), Gaps = 8/608 (1%)
Strand = Plus / Minus
Query: 1 tgtggttaacttagattttgaatttgtaccagaaaatgactgataattcttctggttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgtggttaacttagattttgaatttgtaccagaaaatgactgataattcttctggttgta 636
Query: 61 aattggattgcaatttgttgcctactgcaaggataaaccttgatttgtttcaagagacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aattggattgcaatttgttgcctactgcaaggataaaccttgatttgtttcaagagacaa 576
Query: 121 atgagacttgttcataccaatttggaagatgtttgaacttcaaaataaagagcttccctc 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atgaaacttgttcataccaatttggaagatgtttgaacttcaaaataaagagcttccctc 516
Query: 181 cttgagctagcagcaacaagtcagtcccatccacttcattattcctagcaacatgttttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cttgagctagcagcaacaagtcagtcccatccacttcattattcctagcaacatgttttc 456
Query: 241 ctgtttgaatgtcagtcatttcacagattttttttttgccagaaatttaaaagtcaatcc 300
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 455 ctgtttgaatgtcagtcatttcacaga--ttttttttgccagaaatttaaaagtcaatcc 398
Query: 301 attaaaatattctcatgagatattccttttataaaatctgtcatttatatcaaactaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 attaaaatattctcatgagatattccttttataaaatctgtcatttatatcaaactaaga 338
Query: 361 actagaattttgaagctgtagaattttgtcaagtagttactatttttcttacactttata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 actagaattttgaagctgtagaattttgtcaagtagttactatttttcttacactttata 278
Query: 421 taaactttggaatcatattaaagcaatttattcaaattttatatgtacattatagtgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taaactttggaatcatattaaagcaatttattcaaattttatatgtacattatagtgaat 218
Query: 481 atgagtatatgcacgtgaatatatttgtatacaaaatatattttttattaa--atatata 538
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 217 atgagtatatgcacgtgaatatatttgtatacaaaatatattttttattaaatatatata 158
Query: 539 tatggagagagagagggagagagag----agaagaanaagaagaagaagaagaagaagaa 594
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 157 tatggagagagagagggagagagagaagaagaagaaaaagaagaagaagaagaagaagaa 98
Query: 595 gaagaaga 602
||||||||
Sbjct: 97 gaagaaga 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 18
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1000
Length adjustment: 10
Effective length of query: 592
Effective length of database: 990
Effective search space: 586080
Effective search space used: 586080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
