Query= MSMg01no328_a20.b1 MSMg01no328_a20.b1 CHROMAT_FILE:
MSMg01no328_a20.b1 PHD_FILE: MSMg01no328_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:05 2005
(606 letters)
>mm_chr1_181859888_181860893
Length = 1006
Score = 810 bits (419), Expect = 0.0
Identities = 444/455 (97%), Gaps = 6/455 (1%)
Strand = Plus / Minus
Query: 158 cagctaatggcagaattaagccatgagccagcataccaaaggtcttggatatagctcagt 217
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1006 cagctaatggcagaattaagccgtgagccagcataccaaaggtcttggatatagctcagt 947
Query: 218 gtttggccctgggtttcatttccaaacctgcaagagagggggtcaggggagaggagacag 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 gtttggccctgggtttcatttccaaacctgcaagagagggggtcaggggagaggagacag 887
Query: 278 agag--gagagagagacagagagaa----acagacagacagacagactgggaaagacaga 331
|||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 886 agaggagagagagagacagagagaaacagacagacagacagacagacttggaaagacaga 827
Query: 332 gacacacagagaaataacacacaaaaagtctttgtcatctcttacagagtattgcctcat 391
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gacacacagagaaataatatacaaaaagtctttgtcatctcttacagagtattgcctcat 767
Query: 392 atggctccctctgtccaaaccttcaactcgattacccatcaccctgattctctctggaca 451
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 766 atggctccctctgtccaaaccttcaactcgattacccgtcaccctgattctctctggaca 707
Query: 452 ccatgtcaacacgaggttctgtccaccggtaaaagctgacccaccttcgcccttactaac 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ccatgtcaacacgaggttctgtccaccggtaaaagctgacccaccttcgcccttactaac 647
Query: 512 agcacagtttacccagcttctcttcagattcctctgtgaatgtccagatgtatgtcttcc 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agcacagtttacccagcttctcttcagattcctctgtgaatgtccagatgtatgtcttcc 587
Query: 572 agctcttcttcatgggactcaactctctccgttga 606
|||||||||||||||||||||||||||||||||||
Sbjct: 586 agctcttcttcatgggactcaactctctccgttga 552
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_a20.g1 MSMg01no328_a20.g1 CHROMAT_FILE:
MSMg01no328_a20.g1 PHD_FILE: MSMg01no328_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:05 2005
(570 letters)
>mm_chr1_181667269_181668238
Length = 970
Score = 928 bits (480), Expect = 0.0
Identities = 553/588 (94%), Gaps = 24/588 (4%)
Strand = Plus / Plus
Query: 1 tttgggagatagaaacagggaaaaaaatggaaactttttgtttgtttgc--------ttg 52
|||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 189 tttgggagatagaaacaggggaaaaaatggaaactttttgtttgtttgcttgcttgtttg 248
Query: 53 cttgc----ttttcgagacagggtttctctgtgtaagagagccctggctgttctggactc 108
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cttgcttgtttttcgagactgggtttctctgtgtaagagagccctggctgttctggactc 308
Query: 109 catttgtagaccaggttggctggcctcgaacactcagagatcctcctcctattgcctccc 168
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 309 catttgtagaccaggttggctggcctcgaacactcagagatcgtcctcccattgcctccc 368
Query: 169 aagtattgtgattaaaagtgtgagccaccaccacctgttgagtaaacatttttttaaaag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aagtattgtgattaaaagtgtgagccaccaccacctgttgagtaaacatttttttaaaag 428
Query: 229 tagaatcaaataatactttgtccatgattgttcaaaagacagggtgtggcctggctcctt 288
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tagaatcaaataatactgtgtccatgattgttcaaaagacagggtgtggcctggctcctt 488
Query: 289 tccatgttggtcacaagcgatagctctcaaaaggtaagacagggagcatcctgggaccat 348
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 489 tccatgttggtcacaagcaatagctctcaaaaggtaagacagggagcatcctgggactat 548
Query: 349 ttgttagaatatatacagccataaaattt----tttttccttt-ttttttctctctttt- 402
||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||
Sbjct: 549 ttgttagaatatatacagccatagaatttgggttttttcctttctttttt---tcttttc 605
Query: 403 ttttcttttcttttttctttttcctttttttttctttttcgagacagggtttctctgtat 462
||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct: 606 ttttctttt-ttttttcttttt--ttcttttttctttttcaagacagggtttctctgtat 662
Query: 463 agccctggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatctg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agccctggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatctg 722
Query: 523 cctgcctctgccttaaaggtgtgcaccaccacgcccggcatttgtatt 570
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 723 cctgcctctgccttaaaggtgtgcaccaccacacccggcatttgtatt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
