Query= MSMg01no328_d02.b1 MSMg01no328_d02.b1 CHROMAT_FILE:
MSMg01no328_d02.b1 PHD_FILE: MSMg01no328_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:16 2005
(588 letters)
>mm_chr1_72785471_72786458
Length = 988
Score = 876 bits (453), Expect = 0.0
Identities = 468/473 (98%), Gaps = 2/473 (0%)
Strand = Plus / Minus
Query: 117 attaggctaaaaacgggacaaaggaagaggtgaggccaaacggaaaacgccatgaaaggc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 attaggctaaaaacgggacaaaggaagaggtgaggccaaacggaaaacgccatgaaaggc 929
Query: 177 agtgcccggcatggctggggcccaggactctcctcactgactccattcatttgtagccag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 agtgcccggcatggctggggcccaggactctcctcactgactccattcatttgtagccag 869
Query: 237 gcactgtgctgggccctgcaaaggcaaagttgaatgaatcactatcccagcacttgacga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gcactgtgctgggccctgcaaaggcaaagttgaatgaatcactatcccagcacttgacga 809
Query: 297 gctccctatctagccagggacgccaccgacaaccacgccgcggtgcgctaagcgtggaca 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 808 gctccctatctagccagggacgccaccgacaaccacgccgctgtgcgctaagcgtggaca 749
Query: 357 agaagccatccgaagcacaaaggaagatcacagtgaagcatctccctggtctaacttatg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 agaagccatccgaagcacaaaggaagatcacagtgaagcatctccctggtctaacttatg 689
Query: 417 gcaagtgtgccccgctaggaacaaca-gatgtgctgctgagaggcagaagatccctggca 475
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 688 gcaagtgtgccccgctaggaacaa-aggatgtgctgctgagaggcagaagatccctggca 630
Query: 476 ggggtgaaggtaccagagaggcacaaggcagcttgtgaggaggagagtggccctgcgtga 535
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 629 ggggtgaaggtaccagagaggcacaaggcagcttgggaggaggagagtggccctgcgtga 570
Query: 536 gtgctcggggaaactgctaagacccggcctctccataggcaggcttatgcaca 588
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 569 gtgctcggggaaactgctaagacccggcctctccataggcagccttatgcaca 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_d02.g1 MSMg01no328_d02.g1 CHROMAT_FILE:
MSMg01no328_d02.g1 PHD_FILE: MSMg01no328_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:16 2005
(508 letters)
>mm_chr1_72608410_72609317
Length = 908
Score = 772 bits (399), Expect = 0.0
Identities = 481/519 (92%), Gaps = 24/519 (4%)
Strand = Plus / Plus
Query: 1 tgggttagagccagttgccatggaagttgtgagaaggaaagatgcagaggaaaccagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggttagagccagttgccatggaagttgtgagaaggaaagatgcagaggaaaccagcca 260
Query: 61 catggcagaatgagggttagtctaaatgggttattttaaattatcagctagtcagggaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggcagaatgagggttagtctaaatgggttattttaaattatcagctagtcagggaat 320
Query: 121 tagcctagctatgtggcctaggtatttgcatatatatcatgaatctgagttgttattccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcctagctatgtggcctaggtatttgcatatatatcatgaatctgagttgttattccg 380
Query: 181 ggatcttggggctgggaggaaaacagcacactacaatggattaatattagaagaagaaga 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ggatcttggggctgggaggaaaacagtacactacaatggattaatattagaagaagaaga 440
Query: 241 aagctttcatttcaaactcttttagagttagagttggtatcccttttctactgcctcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctttcatttcaaactcttttagagttagagttggtatcccttttctactgcctcaaa 500
Query: 301 gtagatgtcagttgcacaatctattggattctttcttttctttcttcttccttccttcca 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagatgtcagttgcacaatctattggattctttcttttctttcttcttccttccttcct 560
Query: 361 tccatcctt--tt--ttcttt-------tccttttttcttttctccttcctgccttcctt 409
||| ||||| || ||| || ||||||||||||||| ||| | ||| ||
Sbjct: 561 tccttccttccttccttccttccatccatccttttttcttttc--ctttttttctt--tt 616
Query: 410 ccttccttccttccttccttccttcctttcttccttccttccttccttcctctcttcctc 469
| || |||| ||| |||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 617 cttttcttctttc-ttccttccttccttccttccttccttccttccttcctttctt---- 671
Query: 470 tcttcctctctttctttctttctttctttctttctttct 508
|||| |||||||||||||||||||||||||| ||||
Sbjct: 672 tctt----tctttctttctttctttctttctttccttct 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 93
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
