Query= MSMg01no328_d17.b1 MSMg01no328_d17.b1 CHROMAT_FILE:
MSMg01no328_d17.b1 PHD_FILE: MSMg01no328_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:19 2005
(252 letters)
>mm_chr1_82181416_82182067
Length = 652
Score = 487 bits (252), Expect = e-142
Identities = 252/252 (100%)
Strand = Plus / Minus
Query: 1 tttaatgaaccatcacgtcttgagtcactctcaagaaatgagataacacactaacatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tttaatgaaccatcacgtcttgagtcactctcaagaaatgagataacacactaacatggg 248
Query: 61 catccttaatccccaatgccatgagttgagagtgaataaggtctttgtttttatttttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 catccttaatccccaatgccatgagttgagagtgaataaggtctttgtttttatttttta 188
Query: 121 aatgatatatttttatgtgtgggcttgcttagagatatttgtgtgtatatgcatgtgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aatgatatatttttatgtgtgggcttgcttagagatatttgtgtgtatatgcatgtgcct 128
Query: 181 gtatgtgcgtgtgctgtgttgaggtggtacaagcatgtgagtacaggtgcccgtggaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gtatgtgcgtgtgctgtgttgaggtggtacaagcatgtgagtacaggtgcccgtggaagc 68
Query: 241 caggctttggat 252
||||||||||||
Sbjct: 67 caggctttggat 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no328_d17.g1 MSMg01no328_d17.g1 CHROMAT_FILE:
MSMg01no328_d17.g1 PHD_FILE: MSMg01no328_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:20 2005
(531 letters)
>mm_chr1_82014745_82015676
Length = 932
Score = 870 bits (450), Expect = 0.0
Identities = 516/548 (94%), Gaps = 19/548 (3%)
Strand = Plus / Plus
Query: 1 cttaatccactgagatttgaccttagtacaaggagataggaatggatcaattcttagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cttaatccactgagatttgaccttagtacaaggagataggaatggatcaattcttagtct 246
Query: 61 tgtgaaatcaccagtcacttccctggagaaagagcatgcatgcattcttatcaccttctg 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 247 tgtgaaatcaccagtcacttccctggagaaagagcatgcatgcattcctatcaccttctg 306
Query: 121 aatacctcattttagaaacacacccacaaaacaagggtctccatcaatgaaaaggtacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatacctcattttagaaacacacccacaaaacaagggtctccatcaatgaaaaggtacag 366
Query: 181 gaggtgttgtatgtagttgtaaaaaaatcaggagggaactcttgccagatcatgtcaaaa 240
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaggtgctgtatgtagttggaaaaaaatcaggagggaactcttgccagatcatgtcaaaa 426
Query: 241 aaaaaaaaaaattataaa---gctgatggaagggttcaaagaacatggtggtatttccag 297
||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 427 aaaaaaaaaaa--aaaaaaaagctgatggaagggttcaaagatcatggtggtatttccag 484
Query: 298 ctgagatgaagggagggttgtagtttgaacagaggagatagaagggcttac--------- 348
||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 485 ctgagatgaagggagggatgtagtttgaacagaggagatagaagggcttaccttagaaga 544
Query: 349 ----acagacatagatgaaagggttgagggccatctctaatcacagaaatggcaccactg 404
||||||| |||||||||||||||||||||||| ||||||||||||||| || ||||
Sbjct: 545 gaacacagacacagatgaaagggttgagggccatctgtaatcacagaaatggtactactg 604
Query: 405 cctaccagcccccatgccaaactgcagtcaagtgaactacatctggatttctattcccat 464
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 605 cctaccagccctcatgccaaactgcagtcaagtgaactacatctgaatttctattcccat 664
Query: 465 ttgtccatttaaccaccaggttct-gaaggcccggctgtatgtggcaataatccaatgca 523
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 665 ttgtccatttaaccaccaggttcccgaaggcccggctgtatgtggcaataatccaatgca 724
Query: 524 aacagctc 531
||||||||
Sbjct: 725 aacagctc 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
