BAC Information

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BAC

Clone NameMSMg01-328F02
Chromosome1 (Build37)
Map Location 65,049,934 - 65,050,416
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141
Downstream gene4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328F02.T7 (MSMg01no328_f02.b1)MSMg01-328F02.TJ (MSMg01no328_f02.g1)
ACCAG445445AG445446
length748735
length of high quality
(start - end)		510 (44 - 553)485 (77 - 561)
definitionCHROMAT_FILE: MSMg01no328_f02.b1 PHD_FILE: MSMg01no328_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:26 2005CHROMAT_FILE: MSMg01no328_f02.g1 PHD_FILE: MSMg01no328_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACATCTTGATCCACAAGCAGCAGAAGGGAGCTGTGTTCCTCACTGG
GTGTAGCTTGAGCATAGGAGACCTCAAAGCAAGCCCCCACCCACAGTGAC
ACACTTCCTCCAAGACCACACCTACTCCAGCAAAGCCATACCTCCTAACG
GTGCCACTTTATACGGTCCCAACATTCAAACATGAGTCTGTGGGGAGACA
AACCTATTCAAACCACCACAGGAACATAGGCTATAAGGTAAGGGTTAGGA
GAAAATGAAGCTAAACAAAAAAGCTGGAGCCATCACTTGAAGCAGATGCG
TACACACGCTTCTGTTCTGAATACAGCAAAGAACTACGGCCTCCAGTTTA
AGTAAAGCAGTAACGTCACATTACCAAGTGACAAAACCACAGCCCAGACA
GAAGATGAACGTGGGGAGAAGCACAAAAATCAGGGACTCCACTTAAGAGT
TGATTCCTCTTTCTAGCTACATGGGCTACTCAATGCAACAGATTCCTTCC
GTTTGAGCCCTGGCAGTCCTTAGGCACACCATTGTATCCGCTGAATGAGC
GGTTCTTCTTGCCCTCTTATGCATCCATCATAGGCCAATTGGTGCCAATT
GCCTTTCTACCAAATTTGTCAGATTCCCTTAGGGTACCTCCCAAAACGGT
ATTTCACGCCCAGAGAAAAATTATTTGACCTCCACTCTAAAAAGAATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTCAAGAGCATGAGTCTAAGGA
CACGTGGCATTTAAAAATGTATAATGCCTCATGCTCAGATCGTCATCTCT
GTGGTTATTCTTAATGAAAGGGGAAGGCCTCATTGGACATGGGGGAGGGT
AAGAGATGTAAAGCAGGAGCCTGAATCATCTGGTACAGCCAGGAAGGAAA
AAATGATGAACAGCAAGCTAGCAAACAAAACGCACAATGGTTGAGCTATC
TCAAAGGGACCTGGAGCCAATGCAGAGCTTAAGTGCAAAGCTGGAAAGCT
TGAACAATAATCAACACTGTACACCCCAAGGTACAAAATAACCACGCATG
ACTCTACACTGACAAGAATAGCAAACAAGTTAAAAAAAATAATAAAAAAG
AATGAGAGAAAAGGACAGACCTCCCCAGCAGGACTGCAAACAATTCTGGG
CATGCTCTGCTCCCAGGCAGGTGGAACCTCTCAATAGAGAGATCCACGTG
ACTCCTTTCAAAGATAACTACATGAGAGGTAGAAGAAGAGTAACTTTACA
GTAAAGTAGTGTGCCACCAACCCTGCAGTGGTAAGTCTGGAACGTGCCGT
GCTTGTCACATGGGAAAAAACTGGTAGCTCACCTACCTGCTCCTTCTTCC
CCATCCCAAAAGTTTATAGCCCCATTTTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_f02.b1 MSMg01no328_f02.b1 CHROMAT_FILE:
MSMg01no328_f02.b1 PHD_FILE: MSMg01no328_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:26 2005
         (510 letters)



>mm_chr1_65049507_65050416
          Length = 910

 Score =  864 bits (447), Expect = 0.0
 Identities = 472/483 (97%), Gaps = 5/483 (1%)
 Strand = Plus / Minus

                                                                       
Query: 33  agaagggagctgtgttcctcactgggtgtagcttgagcataggagacctcaaagcaagcc 92
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 agaagggggctgtgttcctcactgggtgtagcttgagcataggagacctcaaagcaagcc 851

                                                                       
Query: 93  -----cccacccacagtgacacacttcctccaagaccacacctactccagcaaagccata 147
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 cacagcccacccacagtgacacacttcctccaagaccacacctactccagcaaagccata 791

                                                                       
Query: 148 cctcctaacggtgccactttatacggtcccaacattcaaacatgagtctgtggggagaca 207
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 790 cctcctaacagtgccactttatacagtcccaacattcaaacatgagtctgtggggagaca 731

                                                                       
Query: 208 aacctattcaaaccaccacaggaacataggctataaggtaagggttaggagaaaatgaag 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aacctattcaaaccaccacaggaacataggctataaggtaagggttaggagaaaatgaag 671

                                                                       
Query: 268 ctaaacaaaaaagctggagccatcacttgaagcagatgcgtacacacgcttctgttctga 327
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ctaaacaaaaaagctagagccatcacttgaagcagatgcgtacacacgcttctgttctga 611

                                                                       
Query: 328 atacagcaaagaactacggcctccagtttaagtaaagcagtaacgtcacattaccaagtg 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 610 atacagcaaagaactacggcctccagtttaagtaaagcagtaacgtcacattagcaagta 551

                                                                       
Query: 388 acaaaaccacagcccagacagaagatgaacgtggggagaagcacaaaaatcagggactcc 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 acaaaaccacagcccagacagaagatgaacgtggggagaagcacaaaaatcagggactcc 491

                                                                       
Query: 448 acttaagagttgattcctctttctagctacatgggctactcaatgcaacagattccttcc 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acttaagagttgattcctctttctagctacatgggctactcaatgcaacagattccttcc 431

              
Query: 508 gtt 510
           |||
Sbjct: 430 gtt 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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