BAC Information

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BAC

Clone NameMSMg01-328L07
Chromosome1 (Build37)
Map Location 78,048,138 - 78,048,359
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328L07.T7 (MSMg01no328_l07.b1)MSMg01-328L07.TJ (MSMg01no328_l07.g1)
ACCAG445735AG445736
length724721
length of high quality
(start - end)
259 (62 - 320)345 (75 - 419)
definitionCHROMAT_FILE: MSMg01no328_l07.b1 PHD_FILE: MSMg01no328_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:56 2005CHROMAT_FILE: MSMg01no328_l07.g1 PHD_FILE: MSMg01no328_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXATCCCACACGCCAGTAGAAGTGGTGAACAGATTCCTATA
GGTTATCCTTTGACCTCCACACAAGTACTATGGCATATACACATGTGTAA
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACATTAGGTGAAACAGAAACAAACACGGAGAGACAAATTATAAAAAAA
AGTAAGTAAATTCTAATAACCTGGAAAAATAGTCATATTTTTCAATAAGG
AGAAAATTGTCTTTTCTTAGTGTGCATCAGGAAAGCCTGCTGCCATCGTA
TATGTGACATAGCACATATGTAGAAGTTCAAAACAACCCTGAGAATTAGT
TTTCACTTCACCTACTACCCCCCCCGAGACAGGATCTCTTGCCATCTACC
AACTCATCAACTCATTCATTCAAGCACTGAGAGGCATCCTTTGGCTGCGC
TCGGCACATGTTAAATCAGGTTGTTTCTTCTGGATGTTCGATCGAACAGT
ACTCTTTGCACACTGGTCCTCCTTCGTATTCACGATGACCTTCACTTGTT
GCATCTGAAATCAACATTAACAATACTGACTCCCTGAGACATTAATCAGA
TGCCCGTACTCCTCCCGGTTCTGCATTGTCCCACCGAAATCCTAAAAGAC
CCTTATAACCCCTGGCCTTTATTG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGCTACACAGAGAAACCCTGTCT
CAAAAAAAAATCAATAGATAGATAATAGGTAGATAGGTCGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ACTGTACATCCAGCCAGAAAGGAAAACCTAGACCATAATAGGAGCTCAAA
CAACTCAATGGCATAAAAAATATATATATAAATGGAAAGTGACCTAAACA
AAGATCTCTCAAAAATACATATACTAATGATCAATGGGCATACTACAAAG
TATTCAATATCATTAGTCATAAAAGAAATGTAAATCAGAACCATAATGAG
GCTCTATGTCACACCAGATAACCCACCTACAACCACAAAAAAATTAAGAA
AGGGAGATTCTTATATACTGCTGGTAGGGATTCAGATTCATAAAATCATT
CCCAAAACAGTAGAAAAGAACCTCAAACACTAAAACTAGAGCCATTGTAA
GCTCCTCATACCAAGTGACAGAGCTACTCCCATTCCCATGTTCACTGTGG
TACTATTTCATAAGAGCTGATATTTGGATCCACAGAGCAGTCTGTCCGTG
AATATGTGTACTAGGTGAATATAGAATATATATCTATCCCCTCTTACCTC
CTTAATACAGAATGGCTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_l07.b1 MSMg01no328_l07.b1 CHROMAT_FILE:
MSMg01no328_l07.b1 PHD_FILE: MSMg01no328_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:56 2005
         (259 letters)



>mm_chr1_78047794_78048453
          Length = 660

 Score =  311 bits (161), Expect = 2e-89
 Identities = 215/253 (84%), Gaps = 33/253 (13%)
 Strand = Plus / Minus

                                                                       
Query: 5   cacacgccagtagaagtggtgaacagattcctataggttatcctttgacctccacacaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cacacgccagtagaagtggtgaacagattcctataggttatcctttgacctccacacaag 507

                                                                       
Query: 65  tactatggcatatacacatgtgtaaacacacacacacacacacacacacacacacacaca 124
           |||||||||||||||||| ||||||                              |||||
Sbjct: 506 tactatggcatatacacaggtgtaa------------------------------acaca 477

                                                                       
Query: 125 cacacacacacacacacacattaggtgaaacagaaacaaacacggagagacaaattat-- 182
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||  
Sbjct: 476 cacacacacacacacacacattaggtgaaacagaaacaaatacggagggacaaattataa 417

                                                                       
Query: 183 aaaaaaaagtaagtaaattctaataacctggaaaaatagtcatatttttcaataaggaga 242
           ||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 416 aaaaaaaag-aagtaaattctaataacctggaaaaatagtcatattttttaacaaggaga 358

                        
Query: 243 aaattgtcttttc 255
           |||||||||||||
Sbjct: 357 aaattgtcttttc 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 660
Length adjustment: 9
Effective length of query: 250
Effective length of database: 651
Effective search space:   162750
Effective search space used:   162750
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)