BAC Information

Click to search

BAC

Clone NameMSMg01-328M11
Chromosome1 (Build37)
Map Location 78,913,682 - 78,914,050
singlet/doubletsinglet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
Downstream geneEG545332, Scg2, Ap1s3, Wdfy1, Mrpl44, Serpine2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328M11.T7 (MSMg01no328_m11.b1)MSMg01-328M11.TJ (MSMg01no328_m11.g1)
ACCAG445787AG445788
length726776
length of high quality
(start - end)
372 (48 - 419)78 (75 - 152)
definitionCHROMAT_FILE: MSMg01no328_m11.b1 PHD_FILE: MSMg01no328_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:01 2005CHROMAT_FILE: MSMg01no328_m11.g1 PHD_FILE: MSMg01no328_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTACAGAGAACCG
CGGAATTCTCCTCCTCTTCTGAAACTGGCTTTGTGTGAAGCACTCCTTGT
TCTATTAAAGGTAATAGAGTCGTCACAGGGCATCCAACATAAACAGTCAA
ATAACCATTTGCAGATAAACTCTGAAAAGAGACGTTGTCTACTTTCAAGC
CTTGTACCCTTCCTTTCAAAGAGAGCACTATACTAAAACAATTCTCTTCA
CGCATTCCATTGCTTGTTGGTGTAGGAGATTGGCTAATTGTGATCATAAA
GGAAATTAAATCAATCACTTTGAAGACTGAAAATGTGCTGAATGCTAACT
CAATTGTGCTGGCCACTCCCTTCCAGAGCTGTAGTCTTAAACCAGATCCT
AGCCAGTAGCTGTCAACTGCCACCACTCAGGTAGAATTACTTGAACCAAG
CACAGTACCTAAAAAAGATTCCTCTGGGAAGTAGAACAGCCAAGTGGCCT
CACTGTGCTTCTGTGTGCCGGAGAGGGACATGTCTCCTTAGGGATGACCC
TCCTTTCATTGAAAACTCCTTGCCCTCCCAGAGGAAAAGTAGCTGGATTC
GATGTTACCATTCCCCTTGATGCTTCAGTTGTAAGGAAAACGGATTCCTC
GTGTACCTGATTAAGATTCTCAGTTAAAAGCGAGGGGAATTCTAAAACCA
TTTAATGGTAATTAAATACCTGTAGT
NNNCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCAGAAATTCTCTGCTTAGCTCTGTACCTCATTT
TAAAATTGGGTTATTTGGGTTTTTGGTGTTTAAATTCTTGAGTTCTTTTT
AAGTCTTGGATATCCTGGGAGAGACTTGAGGTGCCTCGGTGGGGGATAGC
AGGGAGGCACCCACTCAGAGGAGAAGGGGAGGAAGGATTGCTGGAAGTAC
CGTTTTTGTTCTTTACCTCTTCGGCCACGCCTAATTGTACTCATAACATA
TGTACCTCGGTGGACCACTTTTTATCTTTTAAACACACCCCACCCCAACA
CAATTCACCCAACTTTTTTTTCCCCCCCCCCCCCTCATTCTCTTTATTAA
CTTTTATCCTATTCATTTTGGGTTCTCCCCCCCGGGGGGTATATATTTTT
GTTAATACACTTTTAACTCCTTCACACGCTCTTTCTTTATTCCTTTGATC
TTTATATCCCTCCCTCTTATCCTTTCCTTTATTTTTTTATTATCTCTATT
TTTCTTTTTAATCTCGCTTTTGTCTTTTTTTTAAGTCACCACTATTTCTT
CCGGCTCTATACTTCTCTTTTTATCCCATACGATCTTTTCTTCTTTATTT
TTTCCACCTTAATATTTAACATTAAATGTATAAATAATCTATTTTTTTTT
TAATTTTTCTTCGCCGTCCCTATATGCCGGTGTATTTTTAAGATGCATTA
TATTTCCATTTTAACTCTTCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_m11.b1 MSMg01no328_m11.b1 CHROMAT_FILE:
MSMg01no328_m11.b1 PHD_FILE: MSMg01no328_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:01 2005
         (372 letters)



>mm_chr1_78913478_78914250
          Length = 773

 Score =  675 bits (349), Expect = 0.0
 Identities = 364/369 (98%), Gaps = 1/369 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctcctcctc-ttctgaaactggctttgtgtgaagcactccttgttctattaaag 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ggaattctcctcctcattatgaaactggctttgtgtgaagcactccttgttctattaaag 514

                                                                       
Query: 64  gtaatagagtcgtcacagggcatccaacataaacagtcaaataaccatttgcagataaac 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gtaatagagtcatcacagggcatccaacataaacagtcaaataaccatttgcagataaac 454

                                                                       
Query: 124 tctgaaaagagacgttgtctactttcaagccttgtacccttcctttcaaagagagcacta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tctgaaaagagacgttgtctactttcaagccttgtacccttcctttcaaagagagcacta 394

                                                                       
Query: 184 tactaaaacaattctcttcacgcattccattgcttgttggtgtaggagattggctaattg 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tactaaaacaattctcttcatgcattccattgcttgttggtgtaggagattggctaattg 334

                                                                       
Query: 244 tgatcataaaggaaattaaatcaatcactttgaagactgaaaatgtgctgaatgctaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgatcataaaggaaattaaatcaatcactttgaagactgaaaatgtgctgaatgctaact 274

                                                                       
Query: 304 caattgtgctggccactcccttccagagctgtagtcttaaaccagatcctagccagtagc 363
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 caattgtgctggcctctcccttccagagctgtagtcttaaaccagatcctagccagtagc 214

                    
Query: 364 tgtcaactg 372
           |||||||||
Sbjct: 213 tgtcaactg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)