BAC Information

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BAC

Clone NameMSMg01-328O07
Chromosome1 (Build37)
Map Location 22,203,913 - 22,378,839
singlet/doubletdoublet
Overlap geneLOC100040338, Rims1
Upstream geneTmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28, LOC435612
Downstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328O07.T7 (MSMg01no328_o07.b1)MSMg01-328O07.TJ (MSMg01no328_o07.g1)
ACCAG445869AG445870
length731764
length of high quality
(start - end)		373 (50 - 422)301 (80 - 380)
definitionCHROMAT_FILE: MSMg01no328_o07.b1 PHD_FILE: MSMg01no328_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:10 2005CHROMAT_FILE: MSMg01no328_o07.g1 PHD_FILE: MSMg01no328_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,203,913 - 22,204,278)(22,378,541 - 22,378,839)
sequence
TTTTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAATC
CGCGGAATTCTTTGGTGTCACCTAGAAACTATTCGCTCCTCAGGTCCTCT
TGGTAAGGGAGACCAGGCCTTTATTTTTTCCAGTAGAAAGCTAAAGCATG
CGCTTACTGAATTGGACGGAACAGAATCATAAATAAATTAGTGGCATTCT
GCTTTTCCTATCCGAGAAACCTGAAATATAATTTTCCTTCCAGTCTAAAA
GGACATCTAAAAAGTTCCAGACCACACATTGACAGCATTATGTCTGTATC
AGAGTAGAATAAATCGCCGGGGGAAAAGAACAATGCCTGACAGGAAGCTG
GGGATATTGTTTTGAATTTCCAGTTATTCTCTGTGTAAAAGCCACTGGTG
TCTTGAAGTGGAACTTGTCACCCCCCCCCCCCCTCCATCTTGTACTATGC
TTTTGGGAAATAATCATAAAGAGAGTTGGCTGTGTTTAAAAGCTCTGATC
CATTGTTTCCCAAAGTTTGTTAAGTCCTCCCCACAAGCTAATCACAAGCT
TGCATTCCCTGAGAATAAATAATAATAGGAATTAAAATCACCAAATCTCC
AATTGTTATATGCATGTGACAAAGCAAGGGTATTAAATAGTTACTTATCA
TACATATACTTATATTTTTGTTATTTATATTATGNATATTATGCACATAT
GTTATTATGTATGTTATACATACCATTATAT

AAAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGGCAGTTCGTTGGAGAC
AAAGCAAGCTAAACCAAGAGGTGAGGTCATGTGGCTGAGGTGTGATATGA
GCAATAATTTGGTAAATAGTTTTTCTCACCTATGCCAGTGTGTCTTTTCA
ATGATCTAGACCAAACAGGCTTCCTTCTCTAAGTTTTGTAAAGCCAGTGT
GATATATTCACCCCATGAGTGTTAACTTGCTTGTCACTGTTTGTGAGTCT
CATGTTGGATAAAGGTTATCTTGTGCTGCTCCTGTTAGTATTGGGTACTG
TGTAATATTTAAGAGGAATTATGTTGAGCCTCACGAACAATCGAAAACAT
TTCTATGCTTGCAAATTGTTTTCTCCCCCCCCCCCAAAGCATGNGATCTA
ATGTTGACAAACTGATCCATATCGTATGCTCTTTACTGACTTATTTTCAT
GCTTACTATAAATGACAGTGCCGATGTCATATTTAAGCGTAGTACCTGTA
CCTTTCTTTACTCTGTTCTATTATTGTTATTTGACTTCTTTTCATTATTG
ATTTTACACTCTCCGCTAAATTTTAATATTCTTTTATTTATTATATTACT
AATTTTTCAGTTTCAATTTTTCGCCTTAAACTTTTAATTATTATTCACAT
CAATTTAATAATATTTTTATTTTTCCATTCTCTTGCTTTCTTTCTCTTCC
GTTCTTATTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_o07.b1 MSMg01no328_o07.b1 CHROMAT_FILE:
MSMg01no328_o07.b1 PHD_FILE: MSMg01no328_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:10 2005
         (373 letters)



>mm_chr1_22203708_22204480
          Length = 773

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttggtgtcacctagaaactattcgctcctcaggtcctcttggtaagggagacc 65
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttggtgtcatttagaaactattcgctcctcaggtcctcttggtaagggagacc 265

                                                                       
Query: 66  aggcctttattttttccagtagaaagctaaagcatgcgcttactgaattggacggaacag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggcctttattttttccagtagaaagctaaagcatgcgcttactgaattggacggaacag 325

                                                                       
Query: 126 aatcataaataaattagtggcattctgcttttcctatccgagaaacctgaaatataattt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatcataaataaattagtggcattctgcttttcctatccgagaaacctgaaatataattt 385

                                                                       
Query: 186 tccttccagtctaaaaggacatctaaaaagttccagaccacacattgacagcattatgtc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tccttccagtctaaaaggacatctaaaaagttccagaccacacattgacagcattatgtc 445

                                                                       
Query: 246 tgtatcagagtagaataaatcgccgggggaaaagaacaatgcctgacaggaagctgggga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtatcagagtagaataaatcgccgggggaaaagaacaatgcctgacaggaagctgggga 505

                                                                       
Query: 306 tattgttttgaatttccagttattctctgtgtaaaagccactggtgtcttgaagtggaac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tattgttttgaatttccagttattctctgtgtaaaagccactggtgtcttgaagtggaac 565

                 
Query: 366 ttgtca 371
           ||||||
Sbjct: 566 ttgtca 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no328_o07.g1 MSMg01no328_o07.g1 CHROMAT_FILE:
MSMg01no328_o07.g1 PHD_FILE: MSMg01no328_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:10 2005
         (301 letters)



>mm_chr1_22378341_22379041
          Length = 701

 Score =  532 bits (275), Expect = e-155
 Identities = 293/299 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaggcagttcgttggagacaaagcaagctaaaccaagaggtgaggtcatgtggctgag 60
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 499 tttaggcagttcgttggagacaaagcaagctaaaacaaaaggtgaggtcatgtggctgag 440

                                                                       
Query: 61  gtgtgatatgagcaataatttggtaaatagtttttctcacctatgccagtgtgtcttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgtgatatgagcaataatttggtaaatagtttttctcacctatgccagtgtgtcttttc 380

                                                                       
Query: 121 aatgatctagaccaaacaggcttccttctctaagttttgtaaagccagtgtgatatattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatgatctagaccaaacaggcttccttctctaagttttgtaaagccagtgtgatatattc 320

                                                                       
Query: 181 accccatgagtgttaacttgcttgtcactgtttgtgagtctcatgttggataaaggttat 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 319 accccatgagtgttaacttgcttgtcgctgtttgtgagtctcatgttggataaaggttat 260

                                                                      
Query: 241 cttgtgctgctcctgttagtattgggtactgtgtaatatttaagaggaattatgttgag 299
           |||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttgtgctgcccccattagtattgggtactgtgtaatatttaagaggaattatgttgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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